KEGG   Anas platyrhynchos (mallard): 119718130
Entry
119718130         CDS       T02816                                 
Symbol
VPS4A
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 4A
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla03250  Viral life cycle - HIV-1
apla04144  Endocytosis
apla04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:apla00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    119718130 (VPS4A)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    119718130 (VPS4A)
  09143 Cell growth and death
   04217 Necroptosis
    119718130 (VPS4A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:apla04131]
    119718130 (VPS4A)
   03400 DNA repair and recombination proteins [BR:apla03400]
    119718130 (VPS4A)
Membrane trafficking [BR:apla04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    119718130 (VPS4A)
DNA repair and recombination proteins [BR:apla03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    119718130 (VPS4A)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_16 AAA_14 AAA_22 AAA_5 AAA_25 RuvB_N IstB_IS21 AAA_17 AAA_18 DUF815 AAA_2 AAA_33 RNA_helicase nSTAND3 AAA_24 Tma16 PhoH AAA_28 ResIII Mg_chelatase NACHT AAA_7 YCII Parvo_NS1 bpMoxR DUF5906 AAA_30 YhdB
Other DBs
NCBI-GeneID: 119718130
NCBI-ProteinID: XP_038041256
EnsemblRapid: ENSAPLG00030014061
LinkDB
Position
12:complement(1247573..1250710)
AA seq 438 aa
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAQSDKAKESIRAKC
VQYLDRAEKLKDYLRSKERQGRKPVKEAQXTDNKGSDSDSEGENPEKKKLQEQLMGAIMM
EKPNVRWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKA
VATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNEN
ESEAARRIKTEFLVQMQGVGNSSDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAAR
AQMFKLHLGNTPHSLTDANIHELARKTEGYSGADISIIVRDALMQPVRKVQSAMHFKKVR
GPSRTNPNLIVDDLLTPCSPGDPGAIEMTWMEVPSDKLMEPIVCMSDMLRSLATTRPTVN
AEDLLKVKKFTEDFGQEG
NT seq 1317 nt   +upstreamnt  +downstreamnt
atgaccacgtccaccctgcagaaagccatcgacctggtgaccaaggccacggaggaggac
aaggccaagaactacgaggaggcgctgcggctgtaccagcacgccgtggagtacttcctg
cacgccatcaaatatgaggcgcagagcgacaaggccaaggagagcatccgagccaagtgc
gtgcagtacctggaccgcgccgagaagctgaaggattacctgcgcagcaaggagcggcag
ggcaggaagcccgtcaaggaggcccagnnaactgacaacaaggggagcgacagcgacagc
gagggagagaacccagagaagaagaagctgcaggagcagctgatgggtgccatcatgatg
gagaagcccaacgtgcggtggagtgacgtggccggcctggagggagccaaggaggccctg
aaggaagccgtgatcctgcccatcaagttcccacacctgtttaccgggaagcgcacgccc
tggcgagggattctgctcttcgggccccctggcactggcaagtcctacctggccaaggct
gtggccaccgaagccaacaactccaccttcttctccgtgtcgtcctcagacctgatgtcg
aagtggctgggagagagcgagaagctggtgaagaacctctttgagctggcgaggcagcac
aagccctccatcatcttcatcgacgaggtggactcgctgtgcggctcccgcaacgagaac
gagagcgaggcggcgcggcgcatcaagacggagttcctggtgcagatgcagggtgtgggc
aacagcagcgatgggatcctggtgctcggcgccaccaacatcccctgggtgctggactcg
gccatcaggaggaggttcgagaagcgcatttacatcccgctgcccgaggaggcggcgcgc
gcccagatgttcaagctgcacctgggcaacacgccgcactcgctgacggacgccaacatt
cacgagctggcccgcaagaccgagggctactcgggggccgacatcagcatcatcgtgcgg
gacgccctgatgcagcccgtgcgcaaggtgcagtcggccatgcacttcaagaaggtccgc
gggccctcccgcaccaaccccaacctcatcgtggatgatctcctgacgccgtgctcgccc
ggggacccgggggccatcgagatgacctggatggaggtgcccagcgacaagctgatggag
cccatcgtctgcatgtcggacatgctgcgctccctggccaccacccgccccacggtgaac
gccgaggacctcctgaaggtgaagaaattcacagaggactttgggcaggagggataa

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