Pseudarthrobacter phenanthrenivorans: Asphe3_38430
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Entry
Asphe3_38430 CDS
T01435
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
apn
Pseudarthrobacter phenanthrenivorans
Pathway
apn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Asphe3_38430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apn03400
]
Asphe3_38430
Enzymes [BR:
apn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Asphe3_38430
DNA repair and recombination proteins [BR:
apn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Asphe3_38430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADX74931
UniProt:
F0M977
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All DBs
Position
4098252..4099496
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AA seq
414 aa
AA seq
DB search
MSPSKTPAEILSIAGTEVRISSPDKVLFPEQGLTKLDLVQYYLSVAEGALRGAGGRPMVL
KRFPKGIDAEPFFQKRVPENHPPFIDTATLRYASGTSAEEAVIRDAAGLAWVVNLGCLDL
NPHPVRAEDLEHPDELRVDLDPMPGVDWSQIVDVAYVAREVLHDVGLVGWPKTSGSRGLH
ILVRIAPQWSYRDVRLAAETLAREVENRAPGLATARWWKEERGESVFVDFNQNAKDRTVA
SAYSVRPLPDARVSTPLAWDEVRTARPEQFTVLTVPGRFGRMGDPHAGIDDAVGRLDGLL
ALAAELGPAEKPPRSGDGSGRRQSVMPLIEVARTKTKPEALAALDEWKSRHADLVPALHP
ADILVDGMRGSSSLWYRVRVNLQHVTEPERPPQEELIANYDPWAGREWPGQQDS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgagcccctccaagacgcccgccgagatcctcagcatcgcaggcacagaggttcgcatc
tcgagtccggacaaagtgctgttcccggaacagggcctgacaaagctggacctggtgcag
tactacctgtccgtggcggagggtgcgctgcggggcgccggcgggcggcccatggtgctg
aagcgctttcccaaaggcatcgacgccgaaccgttcttccagaagcgcgtcccggaaaac
catccgcccttcatcgacaccgccacactgcgctacgcatccggcacctcggctgaagaa
gcggtgatcagggacgcagcaggcctggcatgggtggtgaacctgggctgcctcgacctg
aatccccaccccgtccgcgcggaggacctggagcaccccgacgagctgcgggtggacctc
gatccgatgccgggggtggactggtcacagatcgtggatgtcgcgtacgtggcgcgggag
gtgctgcatgatgttggcctggtgggatggccgaagaccagcggatcgcgcggactgcac
atcctggtccgcattgcgccgcagtggtcctaccgggacgttcggcttgcggccgaaacc
cttgcccgagaggtggaaaaccgcgctcccggcctggcaaccgcccggtggtggaaggag
gaacgcggcgaaagcgtgttcgtggacttcaaccagaacgcgaaggaccgcacggtcgca
tccgcctattccgtccggccgctgcccgatgccagggtttccaccccgctggcctgggat
gaagtccgcaccgcccggccggaacagttcacggtcctgaccgtacctgggcgctttggc
aggatgggtgacccccatgccggcattgatgatgcggtgggcaggctcgacgggctgctg
gcactggctgccgaattgggacccgcggaaaagcctccacgcagcggggacggctccggc
cgccggcagtccgtgatgccgctgatcgaagttgcccggaccaagacaaagcccgaggcg
ctggccgcactggacgagtggaagtcccggcacgcggacctcgttcccgcactccacccc
gcagacatcctggtggatgggatgcgcggctcgagctcgctctggtaccgggtcagggtg
aacctgcagcatgtcacggagccggagcgcccgccgcaggaggaactgatcgccaattat
gacccctgggcgggcagggaatggccggggcagcaggactcgtga
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