Auxenochlorella protothecoides: F751_0246
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Entry
F751_0246 CDS
T04132
Name
(RefSeq) Exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F751_0246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apro03019
]
F751_0246
Messenger RNA biogenesis [BR:
apro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
F751_0246
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
23611637
NCBI-ProteinID:
XP_011396943
UniProt:
A0A087SEA8
LinkDB
All DBs
Position
Unknown
AA seq
276 aa
AA seq
DB search
MVVSLEGDAFARLYPREYYAKFVSQGMRPDGRVLTQERPISIVRDVVAGADSSALVKLGR
ATALAGIKLEVASPEDERPGEGSIIVQVELPPMCSASSRPGLVSPRAARLTEELGGLAES
GALCDLAQLTHPGGRSVWVAYCDVYVLDADGSLSDVCLLATLAALQALRLPALEPEGAGG
AAVPAPHDTPEGPAAPRALRLEPPLTPLTCGIFGGALVVDPTAEEEALMDALVCLRVNGD
GQLAGVSKLGGSGLGREHLATAHMAAMRRHLALQGP
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atggtagtttccctggagggcgacgccttcgcccgcctctacccccgggagtactatgcc
aaattcgtctcacagggcatgcgccccgatggacgcgtcctcacccaggagcgacccatc
agcatcgtgcgggacgtcgtggccggcgcagacagctccgcgctggtgaagctgggccgt
gcgacggccctggccggcatcaagctggaggtggcgagccccgaagacgagcggcccggg
gagggcagcatcatcgtgcaggtggagctgccgcccatgtgctcggccagcagccggccc
ggcctggtcagcccgcgcgccgcgcggctgacggaggagctgggcggcctggcagagtct
ggtgcgctgtgcgacctcgcccagctcacccaccccggcggacgctcggtctgggtggcc
tactgcgacgtgtacgtgctggacgcggacggcagcctttccgacgtctgcctgctggcc
acgctcgccgccctacaggccctccgcctgccagcgctggagccggagggggcgggcggc
gcggcggtgccagcgccgcacgacacgccagaggggcccgccgcccctcgggccctgcgc
ctggagcccccgctcacccccctaacctgcggcatctttggcggcgccctggttgtggac
cccaccgccgaggaggaagccctcatggacgccctggtctgtctgcgggtgaacggcgac
ggccagcttgccggcgtgagcaagctggggggttcgggacttggcagggagcacctcgcc
acggcccacatggcggccatgcggcgacacttggcgctgcagggcccgtag
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