Auxenochlorella protothecoides: F751_0550
Help
Entry
F751_0550 CDS
T04132
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit 2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F751_0550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apro03019
]
F751_0550
Enzymes [BR:
apro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
F751_0550
Messenger RNA biogenesis [BR:
apro03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
F751_0550
mRNA degradation factors
3'-5' decay
Pan complex
F751_0550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
RNase_T
PAN2_N
BRCT
UCH
RTT107_BRCT_5
PTCB-BRCT
DUF5860
Motif
Other DBs
NCBI-GeneID:
23611941
NCBI-ProteinID:
XP_011398419
UniProt:
A0A087SIG9
LinkDB
All DBs
Position
Unknown
AA seq
1380 aa
AA seq
DB search
MYEDGAAYYELATGQATSAPISCLAFDQHEEAAWFGCSNGWISQSTDGTFSCMELYRNGT
QILIGCGQKGLVAYDLISGKSTGQWETEGMGAVALRGPLSGGGYLAASPAGKIFVMDGRS
RSVRPGTSLTAHVGGFAAVDAAGSLVATAGYSIRGGHPVLERAVKVFDIRMAPRLLCTLP
FGAGPVFLRFHPHLPSTLLAGSASGAVSLLDAAGYGAGTHLSLPGLEQGAGGITCADFSP
SGQCIGLGSASGWVHMLGVGSMPSVAGRGAEVPAPPAGNPAPLVSLGEGDPLSRAPLFYN
LEGPRPLSSLHPGERASVGLAPRVVDPSLQPLIKWSDFVGVIPNPFYDPAAPPGTAAAAS
ARLRAERAQPACVPVDVAARRAERAQRRAAEGGVVLPDRYRRVLVATQQAAAAQSWFQDY
DYSACNASPFVGLENDLANSYCNALVQALFFVPGVRAALLRHVPRSNDEFCLAGELALLF
RMLQTRGAVVCRASNLLRALRQSPQALALGLVEGVAGERGAGDIEVEATKERSLARRAKE
RLAWWKGLQDLPGGPLPSVLAFSCDGQPEGVLLVRQGADLDAMAAPDSMLYELTGVVAHV
CDADESLEWGTDLYEGHLVAHIKVSAGGPYWWLFNDFSIQPVPAAEAGELYDGQKVPCLL
FYTRRAVDAEERAARMHEEEGLLGTRPTPVLSSLGFQALCRISPLGLRANLRAPTFLPLG
PDELPRPGMLLALDAEFVSYSPPQYSLVRGMEVTTRPSRLGLARVSVVRGEGALEGTACI
DDYIRSPEAVHDYLTRFSGIVPGDLDPARSPHCLTTLRRAYLKLRYLVDSGVRFVGHGLK
QDFRMINILVPSEQIVDTVRLFHKPRMRQLSLRFLASYLLKTSIQSGNHDSIEDAHTALR
LYKEYLRLEASGALAWTLDELYNWGKAFGRVVVAMSVLEDVVALVCCADAVRNARQAIQA
RLREHGARVVQRLSKDVSHVVFERKHVPPSAKRAEPDADLLELYTKLDKLVRHIDKPVLL
LKSTPPFKTALPSPGPHSGRRSLLGGIPIPGVERLPSPQVPLPGVCAPGSQGEGTAPTPP
STQPTPSQRAPSPGPRPSPWSAERPWDAPREGARSRRTVAKRARKTTGRVVRQEPAAGAQ
PCARRARGAKLAAEVPVAEELAGPRDPQPVLLALTSVDKDVAELARSATLRLRGIRLCSS
GRGEAGATHLVLGRERRTIKLLLALANGAWLVTPQWITASLDAGEWLPARQFPVGERFRA
AAERSRSAREHGATLLAGQRLYIHARTGSGTARPRKSDASVERREGGAASAADLGSLRRL
AGALGAELTGPTECSLCILAGDAPRPATLPPAVPSVTSGWLLHAAEHYQVPPVEATWLVA
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaggacggggcagcctattacgagcttgccaccgggcaggcgacctctgccccg
atcagttgcctggcattcgaccagcatgaggaggcggcctggtttggctgctccaatggc
tggatctcgcagagcactgacggcaccttctcctgcatggagctgtaccggaatggtacc
caaattctcatcgggtgcggccagaagggattggtggcgtacgacctcatatctggcaag
tccaccggccagtgggagacagaaggcatgggcgcggtggcgctgaggggccccctctct
gggggtggctacctggcggcctctcccgccggcaagatcttcgtcatggacggccgtagc
cggagcgtgcgcccaggcacctccctgaccgctcacgtcggcggctttgctgccgtggat
gctgcaggctccctggtggccacggcggggtactcgatcaggggcgggcatccggtcctg
gagcgggccgtcaaggtgtttgacatccggatggccccccgcctgctgtgcacgctgccc
tttggcgcgggccccgtcttcctgcgcttccacccgcacctgccctccacgctgctggcg
gggtccgcttccggcgccgtctcgctcctggacgcggccgggtacggggccgggacgcat
ctgagcctgcccggcctggagcagggcgcggggggcatcacctgcgcggacttcagcccc
tccggccagtgcatcggcctgggctcggcgagcggctgggtgcacatgctgggcgtgggc
agcatgcccagcgtggcgggccggggcgcggaggtgcccgcgccgcccgcgggcaacccc
gctcccctggtgagcctgggggagggcgaccccctctcccgcgcgccgctcttctacaac
ctggaggggccgcgcccgctttcctccctgcaccctggcgagcgggccagcgtgggcctg
gcgcccagggtcgtggacccctccctccagcccctcatcaaatggtccgacttcgtgggg
gtgatccccaaccccttctacgaccccgcggcccccccgggcaccgccgcggcggcctcg
gccaggctgcgcgccgagcgcgcgcagccggcctgcgtcccagtcgacgtcgcggcccgg
cgcgcggagcgcgctcagcgccgcgccgctgagggcggcgtggtcctgcccgatcgctac
cggcgcgtgctggtggcgacccagcaggctgcggcggcgcagtcctggttccaggactac
gactactcggcgtgcaacgcctcgccctttgtcgggctggagaacgacctggccaactcc
tactgcaacgcgctggtccaggcgctcttcttcgtccccggcgtgcgcgccgcgctgctg
cgccacgtcccacgctccaacgacgagttctgcctggcgggggagctggccctgctcttc
cgcatgctgcagacgcgcggcgccgtcgtatgccgggcgtccaacctgctgcgcgcgctg
cgccagtcgccgcaggcccttgccctgggcctggtggagggcgtggcgggggagcgcggc
gcgggcgacatcgaggtggaggccaccaaggagcggtccctggcacgcagggccaaggag
aggctggcatggtggaaggggttgcaggatttgccggggggccccctgccttccgtcctg
gcattcagctgtgacgggcagccggagggggtcctgctggtgcgccagggcgccgacctg
gacgccatggcagcgccagacagcatgctgtacgagctgacgggggtggtggcccacgtc
tgtgacgccgacgagtcgctcgaatggggcacggacctctacgaaggtcacctggtggcg
cacatcaaggtcagtgcagggggcccgtactggtggctcttcaacgacttcagcatccag
cccgtgccggcggccgaggcgggggagctgtacgacggccagaaggtgccgtgcctgctc
ttctacacgcggcgggccgtggatgccgaggagcgcgcggctcgaatgcacgaggaggag
gggctgctgggtacgcgccccaccccggtgctgtcctcgctgggcttccaggccctctgc
cgcatctcacccctgggtctgcgagccaacctgcgggcgccgaccttcctgccgctgggg
ccggacgagctgccgcggccgggcatgctgctggctctggacgccgagttcgtgtcctac
agcccgccccagtacagcctggtcaggggcatggaggtcaccacgcggcccagccggctg
ggcctggcgcgggtgagcgtggtgcgcggggagggcgcgctggagggcaccgcctgcatc
gacgactacatccgcagcccggaggcggtgcacgactacctcacgcgcttcagcggcatc
gtccccggcgacctggaccccgcacgctcgccgcactgcctgaccacgctgcgccgcgcg
tacctcaagctgcgctacctggtggactcgggggtgcgctttgtggggcacggcctcaag
caggacttccgcatgatcaacatcctggtgccctcggagcagatcgtggacacggtgagg
ctgttccacaagccgaggatgcgtcagctgagcctgcgcttcctggcctcgtacctgctc
aagacgtccatccagtccggcaaccacgactccatcgaggacgcgcacaccgcgctgcgc
ctgtacaaggaatatttgaggctcgaggcctctggagcgctggcctggaccctggacgag
ctgtacaactggggcaaggcgtttggaagagtggtcgtagccatgtccgtgctcgaggac
gtggtggccctggtgtgctgcgccgacgcggtcaggaacgccaggcaggccatccaggct
cgtctgcgagagcatggggcccgggtggtgcagcgcctgagcaaggacgtgtcccatgtc
gtgttcgagcgcaagcacgtccccccctctgccaagagggccgagccggatgccgacctc
ctggagctttacaccaagctggacaagctggtgcggcacatcgacaagcccgtgctcctc
ctcaagtccacgccccccttcaagaccgcgctgccctccccagggccgcacagcgggagg
aggtcgctgctgggtggcatccccattcccggcgtggaaaggctgccatcgccccaggtg
ccgctgccgggggtctgcgcgcccggaagccagggagaaggcaccgcgcccaccccgccg
tcgacccagcccacgccgtcacagcgcgcgcccagtccgggaccgcggccgagcccctgg
tccgcggaacggccctgggacgccccgagggagggcgccagatcacgcaggactgtggcc
aagagagcgcggaagaccacggggcgcgtcgtgcgccaggagccggctgccggcgcccag
ccgtgcgccaggcgggccaggggagccaaacttgcggctgaggtgccggtggcagaggag
ctagctggacccagggacccacagccggtcctcctggcgctgacctcggtcgacaaggac
gtcgccgagctggcgcgctccgccacgctgcgcctgcgtggcatacgactgtgttcctcc
ggccggggggaggcgggcgcgacgcacctggttctgggcagggaacgccgcaccatcaaa
ctcctgctggcactggccaacggcgcctggctggtgaccccccagtggatcacggcgtcc
ctcgacgccggcgagtggctacccgcgcgccagttccccgtcggcgagcgcttccgcgcc
gcggccgagcggtcacgctcggcccgggagcacggcgccacgctgctggccgggcagaga
ctgtacatccacgccaggaccgggtccggcaccgcacggccccggaagtcagatgcgagc
gtggagcggcgcgaaggcggcgccgcctccgccgcagatctgggctcgctgcgcaggctg
gccggtgcattgggcgcagagctcactggcccgacagagtgcagcctgtgcatcctggcg
ggggacgccccccgccccgccaccctgccgccagcggtgccctctgtgacatccggctgg
ctgctgcacgctgccgagcactaccaggtgccccctgttgaggctacctggctagtcgcc
tga
DBGET
integrated database retrieval system
