Auxenochlorella protothecoides: F751_5980
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Entry
F751_5980 CDS
T04132
Name
(RefSeq) General negative regulator of transcription subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F751_5980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apro03019
]
F751_5980
Messenger RNA biogenesis [BR:
apro03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
F751_5980
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
F751_5980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNOT1_TTP_bind
CNOT1_CAF1_bind
Not1
Motif
Other DBs
NCBI-GeneID:
23617371
NCBI-ProteinID:
XP_011398334
UniProt:
A0A087SI85
LinkDB
All DBs
Position
Unknown
AA seq
1264 aa
AA seq
DB search
MAVASAEGVSLAGLLEESGPGADAPALLARLPPPTDRAVAEVAGLLTASPSTWDAEALGS
ALHAAAPSLSLLGDCLQFLEARLDARADPPLEVLVPFLREVEAEANATFQRVYTEALPVA
TLVAELARMAGSAERRERRLHDCVVHNLFDEYRFLARYPDRELELTGELWGRVMAARLVT
GAPLAVAQRHLLDALGTNAPGRGTPLQALAAMAVASAEGVSLAGLLEVLEDGADAPALLA
RLPPPTDRAVAEVAGLLTASPSTWDAEALGSALHAAAPSLSLLGAAVARDVDYPVPDPAL
ADRVGFIFNNLTRANLDGKLVELRRIVTPDLYPWFVTYTTVQRAAQEANQQDVYVAVVDG
WGDRALAAAFVRSSIKYVRVILDSHAVIRTSERTLLRNLASFLGKQTLAKNKPHGGGAAS
LRTVLDVLAAVLLKWVLVDGCCWGGRRRRGAWVQSATRRWGGGLGEEMVGGHGGRPGDHA
PGSARPCLPACIGDGRRGAPPPPPHPVHPLATRPPLFRDADERGAAFNGRPYFRLVVGLV
AELGAPEAGGAAPGDGAARLDATPSSTALEYLEAVAAFLFAVRPQRAPAFAFSWLQLVGE
RRFMPRLLSAPGQAGGMASAGEGLCPYDVALVALLTCALRQDPEADPAPPEEEAGDALPR
FIHAELLEDWPGPGRSIAALAERIKACLEGDLRLRDSAYPQDVLDWLGGTLSAMQTADDL
TSLFATAAALAAGHATPRPAPEPNSALGLFLRRAGALFGRMPFEAVCDLLEEVQLAVHHA
VSGTAPASTPVPAAVDLGILRARLESHALASCGREESGAEVVRAAQAGGAHATLAHALGA
LADVAGLARGRGAGEEDAATPCPARDLAAQLDRVFRRAQALAEPSLAVASRLARARLDSE
AGLEAGDVAVVKAQDTAADAARLAACGLSDLFLGTGSVLGEGGGDDTGWPPGGAPRHAAG
TTAALAARSQLLPAAAWERAGAPRLAQLRCLLALRDAAAGDAERVEALLLLADSQAGVAG
PAQGLRLLDATLGGAGEGRGDVCDAPKGKREEGRVAMDGMCEVGGGWLNDEGEVAIGRVD
IPSSLSAAVRSRVAAARACLEGRRALAVGDAWLARHWAGRLAALAGPGAAALRADLDLQA
GELATAAAALRCEHDGAERGAQALHAAALSCERALPAAPRAAQRQLDAALPVVLAAESRA
LAGEAHLTQAECWLAAEDGMDLATEARARVRASLEAARLEFQAAGEAWNLDHVDEVLASL
AQGP
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggcagtagcctcggctgagggcgtgagcctggcgggcttgctggaggagtctgggccc
ggggcggacgcccccgccctgctggcccggctccccccacccaccgaccgggcggtggcg
gaggtggcgggcctgctcaccgccagcccctccacctgggacgccgaggccctggggtcg
gccctgcacgccgcggccccctccctgtcgctgctgggcgactgcctgcagttcctggag
gcacggctggacgcgcgcgccgacccgcccctggaggtgctggtgcccttcctgcgcgag
gtggaggcggaggccaacgccaccttccagcgcgtgtacaccgaggcgctgcccgtggcc
acgctggtggccgagctggcgcgcatggcgggcagcgctgagcgccgcgagcgccgcctg
cacgactgcgtggtgcacaacctgtttgacgagtaccgcttcctggcgcgctacccggac
cgcgagctggagctgacgggggagctgtggggtcgggtcatggcggcgcgcctggtcacc
ggcgcgcccctggccgtggcccagcgccacctgctggacgcgctggggaccaacgcgccg
gggcgaggcaccccgctgcaggccctggccgcgatggcagtagcctcggctgagggcgtg
agcctggcgggcttgctggaggtgctggaggacggggcggacgcccccgccctgctggcc
cggctccccccacccaccgaccgggcggtggcggaggtggcgggcctgctcaccgccagc
ccctccacctgggacgccgaggccctggggtcggccctgcacgccgcggccccctccctg
tcgctgctgggcgcggcggtggcgcgtgacgtggactaccccgtgcccgacccggcgctg
gcggaccgcgtggggttcatcttcaacaacctcacgcgcgccaacctggacgggaagctg
gtggagctgcggcgcatcgtcacgcccgacctctacccctggttcgtcacctacaccacc
gtccagcgcgcggcgcaggaggccaaccagcaggacgtgtatgtggcggtggtggatggc
tggggcgaccgtgcgctggccgcggctttcgtccgctcctccatcaagtatgtgcgcgtg
atcctggactcgcacgccgtcatccgcaccagcgagcgcacgctgctgcgcaacctggcc
tcgttcctgggcaagcagacgctggccaagaacaagccccacggcggcggcgccgcctcg
ctccgcaccgtgctggacgtgctggccgccgtcctgctcaagtgggtcctggtggatggg
tgttgttggggggggaggaggagaaggggtgcatgggtgcagtcggcgacgcgtcgttgg
ggaggtggactcggggaggagatggtgggcggccacggagggcgcccaggcgatcatgcg
ccgggaagtgcgcgcccgtgcctcccggcatgcatcggggatgggcggcgcggcgccccc
cccccgcctccgcaccccgtccatcccctcgccacgcgcccacccctcttcagggacgcg
gacgagcgcggcgcggcgttcaacggccggccctacttccgcctggtggtgggcctggtg
gccgagctgggcgcgcctgaggccggcggcgctgcgccgggcgacggggccgcccgactc
gacgccacccccagctcaacggcgctggagtacctggaggcggtggcggccttcctcttc
gcagtgcgcccgcagcgcgccccggcctttgccttctcctggctgcagctggtgggcgag
cgccggttcatgccgcgcctgctctccgcgccgggccaggccggaggcatggcgagtgcg
ggggaggggctctgcccctacgatgtggccctggtggccctcctgacctgtgccctgcgc
caggacccggaggcggaccccgcacccccggaggaggaggcgggggacgccctgccccga
ttcatacatgccgagctcctggaggactggccggggcccgggaggtccatcgcagccctg
gccgagcgcatcaaggcctgcctcgaaggggacctccggctgcgcgactcggcctacccg
caggacgtgctggactggctgggcggcacgctctccgccatgcagaccgccgacgacctc
acctccctgtttgccaccgcggcggcgctggcggccggccatgcgaccccccgccccgcc
ccggagcccaacagcgcgctgggtctcttcctgcgccgcgcgggggccctgtttggccgc
atgcccttcgaggccgtgtgcgacctgctggaggaggtgcagctggcggtgcaccacgcc
gtctccggcaccgcccccgcatcgacgcccgtgcccgcggcggtggacctgggcatcttg
cgtgcgcgcctggagtcccacgccctggcgtcatgtggtcgggaagaaagcggggcggag
gtcgtccgcgcggcgcaggccggcggtgcgcacgccactttggcgcacgcgctgggcgcg
ctggccgacgttgccgggctggcacgaggcaggggcgcgggggaagaggacgccgccacg
ccctgccctgcgcgcgacttggcggcgcagctggaccgcgtttttcgccgcgcgcaggcc
ctggccgagccgtcgctggcggtcgcgagtcgcctggcgcgcgcgcgtttggactcggaa
gccgggctggaggccggcgacgtggctgtggtcaaggcgcaggacacggcggccgacgcg
gcgcggctggcggcctgcggcctgtcggacctgttccttggcacgggcagcgtgctgggg
gagggcgggggcgatgacaccggctggccgccggggggtgccccacggcacgccgcagga
acaacagccgcgctggcggcgcgctcgcaactgcttcccgccgcagcctgggagcgggcg
ggcgcgccgaggctggcccagctgcgctgcctgctggcgctgcgggacgcggcggcgggc
gatgcggagcgcgtcgaggcgctgctgctcctggccgacagccaggcgggcgtggcgggg
cccgcgcagggcctgaggctcctggatgccaccctggggggagctggggagggaaggggt
gatgtgtgcgatgcgcccaaaggcaaacgcgaggaggggcgcgtcgcgatggacggcatg
tgcgaggtgggaggcggttggctgaacgatgagggagaggtggcaatcggccgggtcgac
atcccctccagcctgtcggcggctgtgcgatcgagggtggcggccgcacgcgcatgtttg
gaggggcgccgagcgctggcggtcggcgacgcgtggttggcgcggcactgggcgggccgc
ctggccgcactggcggggcctggcgcggccgccctccgcgccgacctcgacctgcaggcc
ggcgagctggcgacggccgccgcggcgctgcgctgcgagcacgatggcgccgagcgcggc
gcccaggccctgcacgccgccgcgctgtcctgcgagcgtgcgctgccagccgcgccgcgt
gcagcgcagcgccagctggacgccgcgctgccggtggtcctcgcggcggagtcccgagcc
ctggccggagaggcgcacttgacgcaggccgagtgctggcttgcagccgaggacggcatg
gatctggccaccgaggcccgcgccagggtgcgtgcgagtctggaggctgcgaggctggag
ttccaggcagcgggtgaggcctggaacctcgaccacgtggacgaggtgcttgccagcctg
gcgcagggcccgtga
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