Auxenochlorella protothecoides: F751_6538
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Entry
F751_6538 CDS
T04132
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F751_6538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
apro03000
]
F751_6538
03019 Messenger RNA biogenesis [BR:
apro03019
]
F751_6538
04121 Ubiquitin system [BR:
apro04121
]
F751_6538
Enzymes [BR:
apro01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
F751_6538
Transcription factors [BR:
apro03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
F751_6538
Messenger RNA biogenesis [BR:
apro03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
F751_6538
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
F751_6538
Ubiquitin system [BR:
apro04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
F751_6538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
Torus
Motif
Other DBs
NCBI-GeneID:
23617929
NCBI-ProteinID:
XP_011402068
UniProt:
A0A087STG5
LinkDB
All DBs
Position
Unknown
AA seq
587 aa
AA seq
DB search
MLYDQGKIQMQHIDAEQLAEEKRRIKGREKPRAALRSRAGLANIRVVQPNLVYAVGLPMD
TCHEDVLREQEFFGQFGRIVKVSVNRAQPHGAGSTPPRQGATGSAYVTFRHAADALRCIK
ALDGGSLRGKPIKACFGTTKYCNAFLKGLGCNNPDCLYLHAVADDADCLTKEEVAAGQLP
SRFMALGAHNTFCPRLTIHPVGSSGERSIAVLPVPRAAGRAAEGAAPQCAGARETVGGAT
AAATRDAVGGSAPLPGRCEPASAVAEPPPPPASRRSAAVAAAPHAQKHQEWPELGGVDRG
KGGAEVPGTTISPAGCSNGQPDAPLPGALPAPPSAGTSQWAATVAAPAEAKAAKRAAAVK
KPQLVPLPSPAKVKPALISPRLDIAVVPLSGRACAPRQPTAVQSGEGEAQPAELAAARSS
EAAPAAEAPAGPVSSSTLSEGLAAPFPRLGAEGAAFELQGPTSLLANGFRNEDRPPLALS
TTGLGSGRRQQSRFAFAQGEVGGPPMVAEEPARAMRAPPGFSPPAPPHVAPGLALLQQLR
AGVPAGLARPQQPLQQGMGHLPFPDPAVMAAQPQLSRPAPPGFDLRT
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgctgtatgaccagggcaagatccagatgcagcacatcgacgctgagcagctggcagag
gagaaacggcgcatcaagggcagggagaagccgcgcgctgcgctacgctcccgcgccggc
ctggccaacatccgggtggtacagcccaacctggtgtacgcggtgggcctgcccatggac
acctgccatgaggacgtgctgcgggagcaggagttcttcggccagttcggccgcatcgtc
aaggtgtcggtcaaccgcgcgcagccgcacggcgcggggtcgacgccgccgcgccagggc
gccacgggcagcgcctacgtcaccttccgccacgcagccgacgcgctgcgctgcatcaag
gcgctggacggcggcagcctgcgcggcaagcccatcaaggcctgcttcggcaccaccaag
tactgcaacgcgttcctgaagggcctgggctgcaacaacccagactgcctctacctccat
gccgtggctgacgacgccgactgcctgaccaaggaggaggtggcagccgggcagctgccc
tcccgcttcatggccctgggcgcgcacaacaccttctgcccgcgcctgaccatccacccg
gtgggcagcagcggcgagcgcagcatcgccgtgctgccggtgccgcgcgccgcgggccgc
gctgcggagggcgctgcgcctcaatgcgcgggggcgagggaaaccgtgggcggcgcgacg
gccgcagccacccgggacgcggtggggggcagcgcgccgctgccgggtcggtgcgagccc
gcctcggccgtcgccgagccgccgccgcctccagcgagccggcgatcggcggcggtggca
gcggcgccgcatgcgcagaagcaccaggaatggccggagctgggcggcgtggatcgaggg
aagggaggcgcagaggtgcctggcacgacaatatcgccggcggggtgcagcaacgggcag
ccggacgccccgctgccgggtgccctccccgcgccgccctcggcagggacttcgcagtgg
gccgccaccgtcgccgcgcctgcggaggccaaggccgccaagcgagcggcagccgtgaag
aagccgcagctggtccccctgccctcccccgccaaggtcaagccggcgctgatcagtccg
cgcctggacatcgccgtggtgcccctgtcggggcgcgcgtgcgcgccccgacagcccact
gccgtgcagtcgggcgaaggggaggcgcagcctgccgagctcgccgccgcgcggtcgtct
gaggccgcgccggcggctgaggctcccgcggggcccgtgtcctccagcacgctcagcgag
ggcctggcggcccccttcccacggcttggggctgagggcgcggcattcgagctgcagggc
cccacgagtctgctggccaacggattccggaatgaggatcggccgccccttgccctctcg
accacaggcctgggctcgggccgccgccagcaatcccgcttcgcgtttgctcagggcgag
gttggcgggcctcccatggtggcagaggagccagcccgcgccatgcgtgccccgccgggc
ttctcaccccccgccccgccccacgtcgcccccggcctggcgctgctgcagcagctgcga
gccggggtgccggcaggcctggcgcgcccgcagcagcccctgcagcagggcatggggcac
ctgccgttcccagacccggccgtcatggccgcccagccccagctgtcacggccggcgccg
ccggggttcgacctcaggacgtga
DBGET
integrated database retrieval system
