Aquihabitans sp. G128: KSP35_00385
Help
Entry
KSP35_00385 CDS
T07304
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aqz
Aquihabitans sp. G128
Pathway
aqz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aqz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KSP35_00385 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqz03400
]
KSP35_00385 (ligD)
Enzymes [BR:
aqz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KSP35_00385 (ligD)
DNA repair and recombination proteins [BR:
aqz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KSP35_00385 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QXC63402
UniProt:
A0A8F4J7T5
LinkDB
All DBs
Position
77325..78248
Genome browser
AA seq
307 aa
AA seq
DB search
MRPAPPPCPARTEVTIDGRALSVSNLDKVLYPEAGFTKAEVIDYYVRIAPVLLAHLGDRG
ITMRRFPNGVDAGSFFEKRCPTHRPDWVGTADGPGDHNGTIGYCRLDSTAALAWAANLAA
IELHAPMARAHDIESPTMVVFDLDPGPGTGMVQCAEVGLWIRDVLAGIGFDAYPKTSGSK
GLQVYLPVNGPATHEAASAFALAVAQVLEKAHPKLIVTTMAKAARTDKVLIDWSQNSRHK
TTICTYSLRARPQPTVSTPVTWDEVAAAADGQPLSFQAADVLARIDELGDLFAPTLDQVQ
ELPAPRT
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
ctgaggcccgccccgcccccatgcccggcgcgcaccgaggtcaccatcgacgggcgggcc
ctgtcggtctcgaacctcgacaaggtgctctaccccgaggccgggttcaccaaggccgag
gtgatcgactactacgtgcgcatcgccccggtgctgctggcccacctgggcgaccgcggc
atcaccatgcgccggttccccaacggcgtcgacgccggctccttcttcgagaagcggtgc
ccgacgcaccggcccgactgggtgggcaccgccgacgggccgggcgaccacaacggcacc
atcggctactgccgcctcgacagcactgcggcgctggcatgggcggccaacctggcagcc
atcgagctccacgcccccatggcccgggcccacgacatcgagtcgcccaccatggtggtg
ttcgacctcgacccggggcccggcaccgggatggtgcagtgcgccgaggtggggctctgg
atccgcgacgtgctggccgggatcggcttcgacgcctaccccaagacctcgggctcgaag
ggcctccaggtgtacctgccggtcaacggcccggccacccacgaggcggcgtcggccttc
gccctggccgtggcccaggtgctggagaaggcccaccccaagctgatcgtcaccaccatg
gccaaggcggcgcgcaccgacaaggtgctcatcgactggagccagaacagccgccacaag
accaccatctgcacctactcgctccgggcccgcccgcagccgacggtgtcgacgccggtc
acctgggacgaggtggctgcggccgccgacggacaacccctctcgttccaagccgccgac
gtgctggcccggatcgacgagctcggcgacctcttcgcccccaccctcgaccaggtccag
gagctccccgcgccccggacttga
DBGET
integrated database retrieval system