Ascochyta rabiei: EKO05_0003639
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Entry
EKO05_0003639 CDS
T09445
Name
(RefSeq) DNA repair protein rad50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
arab
Ascochyta rabiei
Pathway
arab03440
Homologous recombination
arab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EKO05_0003639
03450 Non-homologous end-joining
EKO05_0003639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arab03032
]
EKO05_0003639
03400 DNA repair and recombination proteins [BR:
arab03400
]
EKO05_0003639
DNA replication proteins [BR:
arab03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
EKO05_0003639
DNA repair and recombination proteins [BR:
arab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
EKO05_0003639
BRCA1-C complex
EKO05_0003639
NHEJ (non-homologous end-joining)
MRX complex
EKO05_0003639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_21
AAA_13
CENP-F_leu_zip
Phage_GP20
AAA_29
AAA_22
TMF_TATA_bd
DUF6011
Motif
Other DBs
NCBI-GeneID:
62212285
NCBI-ProteinID:
XP_038800639
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All DBs
Position
5:join(1440201..1440323,1440391..1444188)
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AA seq
1306 aa
AA seq
DB search
MSKIDRMMIQGIRSFGPEKGETIVFTTPLTLIVGWNGSGKTTIIESLRYATTGDLPPNSK
KGGAFIHDPKLRNEKELLAQVKLSFRSSSGVRMVATRNLQVTVTKNGRSQKTLEGSLLML
KDGEKHSISTRVAELDQIIPQYLGVSKAILDNVIFCHQEESLWPLSDASTLKKKFDEIFE
AMKYTKAIENIKMIRKDRNVELGQLKIIEANAKEDKDRAGKSEKRQAALFDEIEQLRGEY
EKIDGECTQAQLKANEAYNHAARYEQILAQLNGKRITFSANKDSVDELQDNLKQMAESDD
ELQEMLDQYEERIATYATQQDDSRQQYGDLKEELQQSRNSLGAKQGEIGKYEAQKEQHDR
QIQLRENIIKETAKRHSIRGYDYDITEKHISDFQQVLSRMSRDQNKSLDRAREDAQRELR
EAQNDLNELNTRKSNLNQGKESARTTITSNDKRISDLQRSMNHIKADEGSEAILQDKKRE
TEEQLNNANSEAASGRFNERIQEVSETVRILEDKKERLTAELGDATKQARESASIDYTRN
ELQSQQHSLEKMKKVHNKRISQLVDPDWDPSTLETTFQSVFSEKSAKVKEATSRRDITQT
KLDNVHFQMSSLESQLKKKRAELQQYERTVKEAIQKDDISDFDETLQQLEDDYDATSTDK
AKFEAQIEYMRQCLMTAERDNTCRLCARALHDDRSQHFTAAGFIEKLNRIIEKAEINMQG
DNAEELLTELEAARNAKPSYELATRLRDSDLPALQKDLAKLSTERDNANKQLEDQDAAIH
DLETEKQDVESLSRDVQTIVHNYNEIIKLEAQVKDLSQKQTTAGLSRGIDAVQADMKKIT
DESRNARNALDQLTSERDKSRNLITTLELRIRDINADLNNAQSKLKEKRALSERIEELRT
ESSNQRETMRGFDRDVEIVVPEIEQAQYKYDDINRRGNEKVQRAHDEASKLSDSVRQLTQ
ADGEINAYIDRGGPQQLARTHRDIENLQGEIARIESEMMEVTRKVKKIEDTMRDTEMTKR
SISDNLRYRKAKRALETLQIEIEKLEEHGAERDKDHYEREAQHWDTRYHQLNTSKTSVER
DMKNKDDQLTELMEEYKSLYEKAANGYREAHIKVETTKAAIEDLGRYAGALDKAIIQYHA
LKMEEINRIIAELWRNAYQGTDVDTIRIAGDSDAKGNSLYNYRVVMVKQDTEMDMRGRCS
SGQKVLASIVIRLALAECFGTNCGLIALDEPTTNLDQQNIQGLAQSLSHIIQMRRKQANF
QLLVITHDEQFLREMNCADYTDVYWRVGRDASQESFIERQNIAEVS
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagatcgaccgtatgatgatccagggcattcgctcctttggacccgagaagggc
gagaccattgtctttaccactccgcttacgctcattgtcggctggaacggttctggcaag
actaccattattgagtcgctgagatatgcaactacaggtgacctgcccccaaacagcaag
aaaggcggtgctttcatccacgatcccaagctgcgaaatgagaaggaactcttggcgcag
gtcaagctgtcgtttcgttcaagctcgggagtgcgcatggttgccacccgcaatctgcag
gtcaccgtgacgaagaatgggcgcagccagaagacgctcgagggctcgttgctcatgctg
aaagacggcgagaagcactccatctccacccgtgttgccgagctcgaccagatcatccct
cagtatcttggtgtatcgaaagcaattctagataatgtcatcttttgccaccaggaagaa
agcctgtggccgctcagcgatgcctctacgttgaagaaaaagtttgacgagatcttcgaa
gcaatgaagtacaccaaagcgattgaaaacatcaaaatgatccgcaaagaccgcaacgtc
gagctcggtcagctgaagattatcgaagcaaacgcgaaggaagacaaggaccgcgccggc
aagagtgagaagcgacaagctgcgctctttgacgaaattgaacaactccgcggagaatac
gaaaagatagatggagagtgcacgcaagcacagctcaaagccaacgaagcttacaaccac
gctgcaagatacgaacagattctagcacagctgaatggaaagcgcatcactttcagcgcc
aacaaagacagcgtggatgaattgcaagacaacctcaagcagatggcggagtcagacgat
gagcttcaggagatgttggatcagtacgaggaacgcattgcgacatacgctactcagcaa
gacgactcgcgacaacagtacggcgacctcaaggaagagctgcagcaaagcaggaactca
cttggtgcgaagcagggcgagatcggcaagtacgaggcgcagaaagagcagcacgatcgt
cagatccaactgcgcgaaaacatcatcaaagagacagctaagcgtcatagcatccgcggc
tacgattacgacatcacagagaagcacatctccgactttcaacaggtcctgagcagaatg
tctcgcgaccaaaacaaatcactcgatcgtgcacgagaggatgcgcagcgcgagctccgc
gaggcgcagaatgatctcaacgaactcaacacccgcaaatcaaacttgaaccagggtaaa
gaatctgcgcggacgactatcacaagcaacgataagcgcatctcagacctgcagaggtcg
atgaaccatatcaaggccgatgaaggcagcgaagctattttgcaggacaagaagcgcgag
accgaggagcagctgaacaacgcaaactctgaagcagcttcaggtcgattcaacgagcgg
atacaggaagtctcagagactgtacgaatactcgaggataagaaggagcggttgaccgcc
gagctcggcgacgcgacgaagcaggctcgtgaatcggcgtccattgactacacgcgaaac
gagctgcaaagccagcagcacagtctcgagaagatgaagaaagttcacaacaaacgcatc
tctcagctcgttgaccccgactgggacccatcgactctggagaccaccttccagagcgtg
ttctcagagaagtctgccaaagtcaaggaagcaacatcgcgtcgcgacattacccagaca
aagcttgacaatgtccatttccaaatgtcgagcctggaatcacagctcaagaagaaacga
gcagagttgcagcagtatgagaggaccgtaaaggaggccattcagaaggacgatatatcc
gactttgacgagacattgcagcaactcgaggacgactacgatgctacctcgacagacaaa
gcaaagtttgaagcccaaatcgaatacatgcggcagtgtctgatgaccgctgagcgagac
aacacttgccgactatgtgccagggctctgcacgacgacaggtcgcagcacttcaccgcc
gccggcttcatcgaaaaactaaaccggatcatcgagaaagctgagattaacatgcaagga
gacaatgcggaggaactgctgacggaacttgaagccgcgcgcaatgctaagccaagctac
gaactggcaactcgtctgcgcgactccgatcttcctgctctccagaaagatctcgcaaaa
ctgtcaacggagcgcgacaacgccaacaagcaactagaagaccaggatgctgccattcac
gacttagagactgagaagcaagatgtagagtctctttcgagagatgtccagacgattgtc
cacaactacaacgagatcatcaagctcgaggcgcaggtcaaagacttgagccagaagcag
acgactgcaggtctgtcaagaggcatcgacgctgttcaggcagatatgaagaaaataact
gatgagagtcgaaacgcaagaaatgcgctggaccagcttacatccgagcgagacaagtcc
cggaacctcatcacgactctcgagctcagaatccgcgatatcaacgctgatcttaacaac
gcacagtcgaaactgaaggagaagcgagctctatctgagcggatcgaggagctgaggaca
gaaagcagcaaccagcgcgaaaccatgcgcgggtttgacagagatgttgaaatcgttgtt
cctgagattgagcaggctcaatacaagtacgacgatatcaaccgccgaggcaacgagaag
gtccaacgcgcgcacgatgaagcctccaagctttctgacagcgttcgccagcttacccaa
gccgacggggagatcaacgcctacatcgaccgcggcggtccgcaacaactcgcacgcaca
caccgggacattgaaaacctgcaaggcgaaatcgcccgcatcgaatccgagatgatggaa
gttacacgcaaggtcaagaaaatcgaagacaccatgcgcgacacagaaatgaccaagcgc
tcaatctccgacaacctgcggtaccgcaaggcgaaacgtgccctggagactcttcaaata
gagattgagaaactcgaagagcatggcgctgagcgcgacaaggaccactatgagcgcgaa
gcgcaacactgggacacacgctatcaccaactcaacacgtccaagacatcagtagaacgc
gatatgaagaacaaggacgaccagcttaccgagctcatggaagagtacaagtcgctgtac
gagaaggccgcaaacggttaccgagaggcccacatcaaagtcgaaaccacaaaggccgca
atcgaagacctcggacgctacgcgggcgccctagacaaagcaatcatccaataccacgcg
ctgaagatggaggaaattaaccgcatcatcgccgagctctggcgcaacgcgtaccaaggc
accgacgtagacacgatccgcattgccggcgactcagacgccaaaggcaacagcttgtac
aactaccgcgtcgtaatggtaaagcaggacacggagatggacatgcgcgggaggtgttcg
tcagggcaaaaagtgctcgccagcatcgtaatccggctcgcgctcgcagagtgcttcggc
acaaactgtggccttattgccctcgacgaacccaccaccaacctcgaccagcagaacatc
cagggcctcgcccagagcttgtcccacatcatccagatgcgccgcaagcaggccaacttt
cagctcctcgtcatcacccacgacgagcagtttttgcgtgaaatgaactgcgctgattac
accgatgtctactggcgagtcggccgcgatgcgagccaggagagcttcattgagaggcag
aacattgctgaggtgagttga
DBGET
integrated database retrieval system