Ascochyta rabiei: EKO05_0004978
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Entry
EKO05_0004978 CDS
T09445
Name
(RefSeq) CCR4-NOT core subunit cdc39
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
arab
Ascochyta rabiei
Pathway
arab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO05_0004978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0004978
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EKO05_0004978
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EKO05_0004978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
Prion
Motif
Other DBs
NCBI-GeneID:
62213725
NCBI-ProteinID:
XP_038799518
LinkDB
All DBs
Position
7:join(1168492..1169142,1169202..1169517,1169568..1175467,1175524..1175586)
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AA seq
2309 aa
AA seq
DB search
MSQQHPWGAPRQNQSTRLTPISTSAAHEQRNTPSPSPSGSRQPYSPAASSFPSLPSLPSL
PSLPSLPSLPSLPSLPALPALPSASSRLVGSRKSSAASSTSSAHFAAAGQQLPPSQLLSS
RSRANVTQPASQLAASAAPGAAVSNSSVAASKLVRASPSSSTLGSPSTATNPSSGAPSQN
LSRIVIAQVFLLLSQFGPVKDDKDRSRWDTQTEQIRKLIDSNGMEVFSKYFRRVLQNNAA
QVFGTPGRNADPNGSYQILVTEMQKLRKEPEQADKIAESISSSEGDLFRDFDLSTLISHF
QMDPLSRTMLALACRKTDLRPKADALLSGLGDDLLLAVAQPGQNDDASPEYVAALIERLL
QDPPQGWDEDKKMSLAYAVQLRYQNLHTPVPGPVEAILTLVELTDGSRNPLVKLVQRAGP
QSTATVEASKELLASAETRDISYQQVATVLLYLALSTGYNVKNFVAALREHRAGQRLDWQ
DVVHAFDRDHLRIEKNHFLAIYNALLPIAQENEGFDIQALWGGNWQHDLTHLYFLLCYLA
CTPQELDVSQIPRLRASYSLETFEGAPDDVKAFAEQAVKHPFVSLDATGALFTMIFRTSE
TYHTAQIMGIPDLVINPHTAEFLVAAAAVPKPWGALQEQALKQLFDPYFHKKLPIYNFVL
YGLWQQDLQWLVDRFVDAYNADPMSLTLILEHAEANNWSETLIRSNTDISLDMAAQAHAR
GKFEIEPWLQQTIEQAGPLFRRILTNFLTQRASDEMQRVRDDQHSLSLPLAVKTVYPLLW
FLAECGLPEHELLPLQRNCIQAYPRLINYGEGVDDIIDANGQSGNALPGDADTKMQEHFK
NMYSGESDVRDIISVLKKYKESRDPAEQELFACMIHGLFDEYNCFGEYPLEALATTAVLF
GGIINFNLLSRIALQVGLAMVLEAVQEYRPEDSMYKFGLQALLHFSSRLSEWPNYCDQLL
IVPGLQGTEIFAKAEEVVGQQEGEVNGDAHNSVGLSNGNGLEDALQQESAVTKFSCLYVD
PPLHGELYEEPDEDVQDKVLFVLNNVSERNLRDKINDLTEAVEERHHQWFANYLVEERAK
MQPNFQQLYLDMLDLFNNRTLWAEVLRETYVSVVRMLNNDGTLGSTERGHLKNLGSWLGS
LTIARDQPIKFRNISFKDLLTEGYDTDRLLLVIPFTCKVLVQAAKSTVFKHPNPWLMEIL
GVLMELYHFADLKLNQKFEIEVLCKGLDLDHKEIEPTNSIRARPQADEEYLNPMVTDGLD
AFGDLSIMSLNRARGPSERFSSAAITAALPDFTNQLQYPPSGNSAVPPAQIKKIFLTAVN
QAIQEIIAPVVERSVTIAAISTSQLISKDFAMEPDEEKLRTAAHTVVKALSGALALVTCK
EPLRMSIQNNIRIMARDLPEQTLPEGHVVMFVNDNLDLVCNTVEQAAEMSSLAEIDMQVE
EAVRMRRMFRNTRPNEPFKDANISPWAFYIPEPYKQTAGGLNREQLAIYEDFGRQARGLP
HTNNISQDSGRQVPDVLQDQFVAVPNLPTPGAAPAEPRQPTQQPRLQNLQSAHVPPSQQQ
LNGYMDGPVPAGGQRGVEDLLVELTQVIKDASEDRISELQPGSSAIHRVFDQLISSIEFA
GPNKDSWAFRIAGQVTNHLFSDSLQRLEVEVMAHLLSHLCQLSVTTSRQVLMWLATLHDD
DRIFKATVMVALMEVGLMDMHRLNTTVAKAIQERRVAAVEMLSTLMEELLLSEHPSAFRA
DFALSIDALTNWLAEDPSLEVGKRVIANLQAAPAEVSLTPPATGHKDQLEYIFDEWVHLQ
LPETPKKTIGAFIYQLHKQDIMQSQETSIEFIRTCIDASVTAYEQEQSLPYGAGNLDTAT
VKIDALGKLIVDLVAYQEERETGAKESKARYLDQMLVVTVLVLCNHHNTRGDAFNQKVFF
RLFSTILFRLNEATKEDTLAEHKGELFLCVARALLILQPSHFQRFTFSWLTLVAHRIFIP
AMLEGGQSDERWDVYARLMETLLVFTGQLIKPTGETIMAQNFYRGVLRVLLVIHHDYPEF
FVEHHFRLCNSIPMHCTQLRNLIVSAYPSTILEMPDPFTAGLKVDRLENNLQSPVVRTDI
VEILSKAGIKTTIDNLLKASEPKAQDIRKVCDAIYFPEAKESGFELVPTTADPALIHALV
LYIGVATLGTEATKAPLFDSESSAARLMLRLVKDFHPEAKFHFVSAIANQLRYPNTHTHF
FSYALLHLFGSPDDDEETLEIQQTITRVLLERLLVHRPHPWGLIITLLEILKNRTYAFWD
LPFVKAAPEVERLLNALFTHAQQSPRPLA
NT seq
6930 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcaacacccctggggcgccccgagacaaaaccagagcactcgcctgacgccc
atctccaccagcgccgcccacgaacagcgcaacacgccctcgccctcgcccagcggctcg
cgccagccctactcacccgccgcctccagcttcccctcgctgccctcgctgccctcgctg
ccttcgctgccctcgctgccctcactgccctcgctgccctcgctccccgcgctccccgcc
ctgccctcggcctcgtcgcgcctcgtaggtagccgcaagtcgtcggccgcctcgtcgacg
tcgtctgcccactttgcagccgcaggacagcagctcccgcccagccagctgctgtcctct
cggtcccgggccaacgtgacccagcccgcctcgcagctggccgcctctgccgcccccggt
gcagctgtgtccaacagcagcgtcgcagcttccaagcttgtccgcgcctcgccctcgtcg
agcaccctcggctcgcccagcacggccaccaacccctcctccggtgctccgtcacagaac
ctctcgcgcattgtcatcgcccaggtcttcctgctgctcagccaattcggccccgtcaag
gacgacaaggaccgctccaggtgggatacacagaccgagcagatcaggaagctgattgat
tcaaacggcatggaggtgttttcaaagtacttccgccgcgtgctgcagaacaatgcagca
caagtcttcggcacgcccggccgcaacgccgaccccaacggcagctaccagatcctcgtg
actgagatgcagaaactgcgaaaggaaccagagcaagcagacaagatcgcggaatccata
agctccagcgaaggagacctgttccgcgacttcgacctgtccaccctcatctcccacttc
caaatggaccctttgtcgagaacaatgctcgcacttgcctgcagaaagaccgacctgaga
cccaaagcggatgcactgctttcaggcctcggcgacgacctgctgttggctgttgctcag
cctggtcaaaatgacgacgcgagtccagaatacgttgccgcactcatcgagcgccttttg
caagacccaccgcaaggatgggacgaggacaagaaaatgagccttgcctatgctgtccag
ctccgctaccagaacctccacacgccggtaccgggcccagtcgaggcgatactcaccctc
gttgagctcacagatggttcacgaaaccctcttgtgaagctagtacaacgggcggggccg
caaagcacagctacagtagaagccagcaaagaactgcttgcatcggctgagacacgagac
atcagttaccagcaagtggccacagtgttgctctatctggccctatccaccggatacaat
gtcaaaaactttgtagcagcgttgcgagagcatcgcgctggacagcggctggactggcaa
gatgtcgtacacgctttcgaccgggaccatctgcgcatcgagaagaaccacttcctcgca
atttacaacgcactgcttccgattgcccaggaaaacgagggcttcgacatccaggcgcta
tggggcgggaactggcagcacgatttgacccacttgtacttcttgttgtgttatctggcg
tgcacgccccaagagctggatgtctcccagataccacgactgcgcgcttcgtactcgctg
gagacttttgagggagccccagacgacgtcaaagcgttcgcagaacaagctgtcaaacac
ccatttgtatcgcttgatgctacaggagctctctttacgatgatcttccgtacctcggag
acctaccacacagcccaaataatggggatcccagatctagtcatcaatccgcatacagca
gagttcctggtcgcggcagcagccgtgccgaagccttggggcgccttgcaggagcaagct
ttgaagcagctgttcgacccatacttccacaagaagctaccgatctacaactttgttctc
tacggcctctggcagcaagatctccaatggcttgttgatcgcttcgtagatgcctacaac
gccgaccccatgtctctcacacttattctagaacacgccgaagccaacaactggtcggaa
acgttgatccgcagcaacacggacatcagcttggatatggcggcacaagcgcacgcacgt
ggcaaattcgaaatcgagccttggctgcaacagaccatcgaacaagccggacctcttttc
cgacgcatcttgaccaactttctgactcagagagcttcggatgagatgcaacgcgtgcga
gacgaccagcactccctcagcctgccgctcgccgtcaagacagtatacccgttgctctgg
ttcctggcggagtgcgggctgcccgagcatgagctcttgcccctccaacgcaattgcatc
caagcctatcctcggctcatcaattacggcgaaggcgtggacgacatcatcgatgccaac
ggccaaagtggaaatgctctcccaggagatgccgacaccaagatgcaagaacatttcaag
aacatgtacagtggcgagagcgacgtgcgtgacatcatatcagtgttgaagaagtacaag
gagtctcgcgaccctgcggagcaagagctgtttgcttgtatgatacacggccttttcgac
gagtacaactgcttcggcgaatatcctttggaagctctggcgacgacagcagtccttttc
ggcggtatcatcaacttcaatctgctgtccaggattgcgcttcaggttggactggccatg
gtgctggaagctgtgcaagagtacaggcccgaggattccatgtacaaatttggtctccag
gctctgcttcatttctccagccgactgtctgaatggcccaactattgcgaccagcttctc
atcgttcctggtcttcaaggcaccgagatctttgctaaggcggaggaggttgttggacag
caggagggcgaggtcaacggggatgcgcacaacagcgtcggcctctctaacgggaacgga
ttggaagacgcgcttcaacaggagtctgcggtgaccaagttctcttgcctctatgtcgac
cccccgctgcacggagagctttacgaagaacccgatgaggatgttcaggataaggtgctt
ttcgtgctgaacaacgtttccgagcgcaacctgcgcgataagattaacgacctcaccgaa
gccgtcgaagaaaggcaccatcagtggtttgccaactatctcgtcgaggagcgtgcgaag
atgcaaccaaacttccaacagctctacctagatatgctggacctgttcaacaaccggaca
ctgtgggctgaagtccttcgtgagacctacgtcagcgttgtacgaatgctcaacaacgat
ggaacacttggttcgaccgagcgaggtcacttgaagaaccttgggtcctggcttggttcc
cttacaatcgctcgcgatcaaccaatcaaattccgcaatatatcgttcaaggatctgctg
actgagggatacgacacggaccgactccttctggttatcccattcacctgcaaggtacta
gtacaggctgcaaagtcgacagtcttcaaacatccaaatccatggttgatggaaattctc
ggtgtgctgatggagctgtaccattttgcagatctcaagttgaatcagaagttcgagatt
gaggtcctctgcaaggggttggatctggatcacaaggagatcgagcccacgaatagcatt
cgagcccgaccgcaagctgacgaggaatacttgaaccctatggtaacagatgggctcgat
gcctttggcgacttgtccattatgagtttgaaccgtgctcgaggcccgagcgagcgattc
tcgtctgcggccatcactgcagctctgcctgacttcacaaaccagctgcagtatcctcca
tccggcaatagcgccgtgcctccagcacagatcaagaagatcttcctcacggcggtcaat
caggctatccaagagattatcgctccagtcgttgagcgctctgttacaatcgccgccatc
tccacctcacaactcataagcaaagactttgcgatggagcctgacgaggagaaactccgg
accgcagcacacactgttgtcaaagcgctgtctggtgcgttggctctagtaacctgcaag
gagcccctacgcatgagcatccagaacaacatccgtataatggctcgcgacctcccagaa
cagacccttcccgaaggtcatgtggtcatgttcgtcaatgacaatctggatttggtttgc
aacactgtagaacaggcggccgagatgtcttccctggctgagatcgatatgcaagttgag
gaggctgtccgcatgcgtcggatgttccgcaacacgcgaccgaacgagccattcaaggat
gcgaacatcagtccttgggctttctacatccctgagccctacaagcaaacagctggagga
ttgaacagagaacaactagcaatctacgaggactttggtcgacaggcgaggggccttcca
cacacgaacaacatctcacaggacagtgggcgccaggttcctgatgtacttcaggatcag
tttgtcgcagtgccaaacctgccgactcccggtgccgcccctgctgagccacggcaacct
acgcagcagcctcgactgcaaaaccttcaatctgcacacgtgcctccttcacaacagcag
ttgaacggctatatggatggccccgttcctgcaggtggtcaacgtggtgttgaggatctt
cttgtagagctgacgcaggtcataaaggatgcatccgaagaccgcattagtgagcttcaa
cccggaagcagcgctatacaccgcgtgttcgaccagctcatctcaagcatcgagtttgct
ggacccaacaaagactcatgggcattccggatcgctggacaggtcaccaaccatctgttc
tccgactccctgcagcgtctggaggtcgaggtcatggcgcatctgctaagccacctctgc
cagctgtctgtaaccacttcacgtcaagtactcatgtggcttgcgacccttcatgatgac
gaccgtatcttcaaggccaccgtcatggtcgccttgatggaggttggcttaatggacatg
catcgtctgaacaccaccgtcgctaaagcgatccaagagagacgtgtcgctgctgttgag
atgctctctacgttgatggaggagctgctgcttagcgagcacccaagcgcgttccgggct
gactttgctttgtctatcgatgctcttaccaactggctagcagaagacccttcactcgag
gttggcaagcgtgttatcgccaatctacaagcagctcctgctgaggtatccttgactcca
cctgccactggacacaaagatcagctagaatacatcttcgacgagtgggttcacctgcag
cttccagagacgccaaagaagacgattggagcgtttatctaccaactccacaagcaagac
atcatgcagagtcaagagacctccatcgagttcatccgcacctgcattgatgcctctgtc
actgcatacgagcaggagcagtctctgccgtacggcgccggaaacctcgacacggccacc
gtgaagattgatgcactcggtaaacttatcgtggaccttgtcgcttatcaggaagaacgt
gaaacgggtgctaaagaaagcaaggcgagatacctcgaccaaatgctcgtcgtaacagtc
ctggtgctgtgcaaccaccacaacactcgaggagatgctttcaatcagaaggtcttcttc
cgattattttccacgatcctgttccgccttaacgaggcgaccaaggaagatacattggcg
gaacacaagggcgagctcttcctctgtgttgctagggctctcttgatcctgcaacccagt
catttccagagattcaccttctcttggttgacccttgttgctcaccgtatcttcattccg
gcaatgcttgagggcggccaatcggatgagcgctgggatgtttatgcccgcctcatggag
actcttttggtcttcaccggacagttgatcaagccaaccggagagaccatcatggcccag
aacttttaccgtggcgtcttgcgcgtcttgcttgtgatccatcacgattaccctgagttc
tttgttgaacatcatttccgtctgtgcaacagtatcccaatgcattgcactcagctccgg
aatctgattgttagtgcctacccgtccaccatcctggagatgccggatccatttacagca
gggctgaaggttgaccgacttgagaacaacctccagtcacctgttgttcgtacggatatc
gtggaaatcctctcgaaagcgggcatcaagacgaccattgataacctgcttaaagcgtct
gaacccaaggcccaggatattcgcaaggtctgcgatgccatctacttcccagaggccaaa
gagagtggtttcgagctagtgccgaccactgctgacccagctcttatccatgcgctcgtt
ctctacattggagtcgcgactctaggcactgaagcgaccaaggcgccattgttcgactca
gagagctcggctgctagattgatgcttaggctggtcaaggacttccaccctgaagcgaag
tttcacttcgtcagcgcgattgccaaccagctgcgctacccgaacactcacacacatttc
ttcagctacgcgctgttgcacctcttcggctctcccgacgatgatgaagaaacgcttgag
atccaacagactattacaagagtgcttctggaacgtttgcttgtacatcgtcctcaccca
tgggggctcatcatcactttgctcgagatcctaaagaatcgcacatatgcgttctgggat
ctgcccttcgtcaaggcagcacctgaagtcgagcgtcttctcaacgctttgtttactcat
gctcagcagagcccccgaccgctagcctag
DBGET
integrated database retrieval system
