Apteryx rowi (Okarito brown kiwi): 112975870
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Entry
112975870 CDS
T07573
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
arow
Apteryx rowi (Okarito brown kiwi)
Brite
KEGG Orthology (KO) [BR:
arow00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arow04147
]
112975870 (COL18A1)
00535 Proteoglycans [BR:
arow00535
]
112975870 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
arow00536
]
112975870 (COL18A1)
Exosome [BR:
arow04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112975870 (COL18A1)
Proteoglycans [BR:
arow00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
112975870 (COL18A1)
Glycosaminoglycan binding proteins [BR:
arow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112975870 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
112975870
NCBI-ProteinID:
XP_025942289
LinkDB
All DBs
Position
Unknown
AA seq
1419 aa
AA seq
DB search
MPESTVRPPTSIASTAAPPIGTAPARSQDTTSSSTKGPHLLTTAGPELVLPEPTESLGKR
KGTRVSLQRPVAPRPENLSTEVSLLELIGDPPPEEILKIYGPDNNPGYVFGPSANTGQVA
RYHLPSPFYRDFSLLFHIQPTTPRAGVLFAITDSSQSIIYVGVKLSDLRAGKQQIIFYYT
EPDSQSSYAAATFTVPTLLNRWTRFAISVEEDEVVLYLDCEEHERVXFERSPDDMELEDG
SGLFVAQAGGADPDKYQGVIADLKLKGDPRAAEHQCEEEEDDAEEVSGDFGSGAEDGHHP
LGKDRGVPGLADAVPVTSPPVAEGSVPRISAGSPTQAERAGVEETLLVSAGGTGPKEERG
EKGERGPKGDLGTGGVLGTGSAKGEKGEKGDVGIKGSAGFGYPGSKGQKGEPGDPGPPGT
VVQRPDGSVAEQVTGPPGPAGPPGPPGKDGAPGRDGEPGDPGEDGKPGDTGPQGFPGTPG
EPGLKGEKGDPGTGPRGPPGPPGPPGPPGPSFQRDKLTFIDMEGSGFGSDLDSLRGPRGP
PGPPGPPGVPGLPGEPGRFGMNLTDLPGXPGLPGRDGNPGPPGPAGPPGPPGKDGMAGQX
GPKGERGDVGDLGLPGAPGPKGSKGETGPAGAPGEMGLAGLPGPVGPRGQPGPPGPPGPP
GPGYEAGFGDMEGSGLPFAAGSTGPRGPEGPQGLPGLPGIKGDAGSPGQPGLPGLKGDPG
MPGVDGRPGLEGFPGPQGPKGDRGSPGEKGERGQDGVGLPGPPGLPGPPGQVIYISNEDK
SLAAFPGPEGRPGHAGFPGPMGPKGDQGSPGFQGSPGLKGEKGEPGVIISPDGTIIAANV
KGEKGEPGPRGPVGPSGPHGRSGQKGEIGFPGRPGRPGMNGLKGEKGDPANVSGMPGPRG
PPGPPGPPGPPGLPGSAVYDNNNAFGDTSHPALPAFPGFHQFPGQKGEKGDVGAPGPPGQ
FPYDLSRFSANLRGEKGEAGLKGEKGEPGGTALYGSSVSALPGPPGPQGYPGLPGPKGDS
IVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISIPGPPGPPGPPGPPG
TSGTSPGLRTLPTYQAMLSTAHELPEGWLVFLADRQELYVRVRNGFRRVLLEEHTLISSS
ALDNEVYDKPPSVHYSHXGTVPSGSQHPFQPRGPLHPLRNHSPPPTARPWRGDDIVANQH
RLPEQPLLHHGAQHQQELLNSYYINRRPDPAPVATHVHQDFQPALHLVALNAPLSGSMRG
IRGADFQCFQQAREVGLLGTFRAFLSSRLQDLYSIVRRADRSTVPIVNLRDEVLFNNWES
LFAGSEAPMRAGARILSFDGRDILXDSAWPQKSVWHGSDAKGRRLTESYCETWRTEERAA
VGQASSLSSGKLLEQAASSCQHAFVVLCIENSFMTASKK
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgccggagagcacggtacgaccgccaacaagcattgcttcgacggccgctcctcccatc
ggcacggcacctgcccgcagccaggacacgaccagcagctccaccaaaggcccccacctt
ctgacgacagcaggacccgagctggtgctccccgagccaacagagtcgcttggcaaacgg
aaggggactcgggtgtccttgcagaggccggtggcaccccgtccagagaatttgagcact
gaggtcagcctcctggagctgatcggagaccccccaccagaggagatcctcaaaatttac
ggccccgacaacaacccaggctatgtctttggacccagtgccaacacaggccaggtggcc
cggtaccacctgcccagccccttttaccgggacttttctctcctgttccacatccagccc
accaccccccgggctggtgtgctctttgctatcacggactcctcgcagagcatcatctat
gtgggcgtcaagctctcggacctgcgggcgggtaagcagcagatcatcttctactacaca
gagccagactcccagagctcctatgcagcggccaccttcaccgtgcccaccctgctgaac
cggtggacacgctttgccatcagtgtggaggaggatgaagttgtcctctacctggactgc
gaggagcacgagcgggtccrcttcgagcgctccccagatgacatggagctggaagatggt
tctgggctcttcgttgctcaggctggaggagctgacccggataaataccagggggtgatt
gccgacttgaagctgaaaggggatccccgggcagccgagcaccagtgtgaggaagaggag
gatgacgctgaagaggtatccggcgattttggcagcggagcagaggatggacaccatccc
ttgggaaaagacaggggcgtcccgggtctggcagatgccgtccccgtcacttctccccct
gtggctgagggcagcgtgccgaggatcagcgcgggctccccgacgcaggcagagcgcgcc
ggagtggaggagacgctgctggtgtccgcgggaggcactggccccaaagaggaaaggggg
gagaagggtgaacgcggccccaaaggggacttggggactggcggcgtcttggggacaggc
agcgccaaaggtgaaaagggagaaaaaggtgacgtgggcatcaagggcagcgcaggattt
ggctaccccggctccaagggccagaaaggcgaaccgggcgaccccggcccccctgggact
gtcgtgcagcgccccgatggctccgttgcggagcaggtcactgggccgccggggcctgcc
ggcccaccagggccgcctgggaaagacggagcccccggcagagacggcgagcctggcgat
cccggtgaagacggcaaacctggtgacacggggccccagggattccccgggacgccaggg
gagcccgggctgaagggcgagaagggcgatcccggcacgggccccaggggcccccccgga
ccgccgggcccccccggaccgccgggcccctccttccaacgtgacaagctgacgttcatc
gacatggagggctctgggttcggcagtgacctggacagcctgcggggcccgcgcgggccg
cctgggcccccggggcctccaggcgtgcccggcttgccgggggagccggggcgattcggc
atgaacctcacagacctgccaggacygccggggctgccaggccgagacgggaaccctggg
cccccggggccagcgggtcctccaggtcctcctgggaaagacgggatggctgggcagcyg
gggcccaaaggagagcggggtgacgtgggggacctcggcctccctggagcacctggaccc
aagggcagcaaaggagaaacaggaccagcaggagctccgggagaaatggggttagctggc
cttcccggacccgtcggacctcgagggcagccaggtcccccaggccctcctggaccacca
gggccggggtatgaagctggatttggcgacatggagggctcagggctgccattcgcagct
ggctccactggaccacgcgggcccgaaggaccacaggggctgccaggactgccgggaatc
aagggagatgctggcagccctgggcagcctggcttgccaggactgaagggggacccaggc
atgcctggtgtggatggccgccccggcctggagggcttccctggaccacagggacccaaa
ggtgacagaggcagccctggcgagaagggcgagcgaggccaagatggtgttggattgcct
ggcccccctggtttacctggcccaccaggacaggtcatctacatctcaaatgaagataag
tctttggcagcttttccaggtccggaaggcagaccgggccatgccggcttcccgggcccc
atgggaccaaaaggagaccaggggtcgcctggcttccagggctccccagggctgaagggt
gagaagggagagcctggtgtcatcattagtccggacgggaccatcatagctgctaatgtg
aaaggagaaaagggggagccagggccgcggggaccggtgggtccttctggcccccacgga
cggtctggacagaagggagaaatcggctttccgggcagacctgggcgtccaggcatgaac
gggctgaagggygagaagggcgatcccgccaacgtcagcggcatgccaggcccgcggggt
cccccaggtcccccaggccctccagggcctcctgggctgcccggcagtgcagtctacgac
aacaacaatgccttcggtgacaccagccatcctgcgctgccggccttccctggtttccac
cagtttccaggacaaaagggagaaaaaggagatgttggtgctccgggtcccccaggccag
ttcccatacgacctgagccgattcagtgccaacttgcggggtgaaaaaggggaggcaggc
ctcaagggcgagaagggcgaaccaggcgggacggcgctatatggctccagcgtctccgcg
ctgccaggcccaccgggtccccagggctaccctggcctgccgggtcccaagggggacagt
attgttggtccaccggggcctccaggaccacagggaccccctggcattggatatgaaggg
cgacagggtcctcctggccctcctggcccccctggtcctccctccttcccaggcccacac
agacaaactatcagcattcctggccctcccggcccaccaggaccccctggaccaccaggt
accagcgggacatctcctgggctacgcaccctgccaacgtaccaggccatgctgagcacc
gctcacgagctgcccgagggctggctcgtcttccttgctgaccggcaggagctctacgtc
cgcgtgcgcaacggtttccgcagggtgctgcttgaggagcacaccctgatctccagctct
gctctggacaacgaggtgtatgacaagccacccagtgtccactactcccacrgcggcacc
gtcccttcagggtcccagcaccccttccagccccgtgggcccctgcaccctctccgcaac
cacagccccccgcccaccgcccgaccgtggcgaggggacgacatcgtggccaaccagcac
cgccttcctgagcagcccctgctccatcatggtgcccagcatcagcaagagctcctgaac
agttactacatcaaccgccggccagatccagcccccgtagccacccatgttcaccaggac
ttccagcctgccctccacctcgtggccctgaacgcaccgctgagcggcagcatgcgtggc
atccgaggagccgacttccagtgcttccagcaagcccgcgaggttggcctcctgggcact
ttccgggccttcctctcctcccgcctgcaggacctatacagcatcgtgcgcagggctgac
cgcagcacggtgcccatcgttaacctccgggacgaagtgctcttcaataactgggagtcc
ctctttgcgggcagcgaggccccgatgcgggccggtgcgcgcatcctctccttcgacggc
cgggacatcctgcrggactcggcatggccccagaagagcgtgtggcacggctcggatgcc
aagggccggcgcctcaccgagagctactgcgaaacgtggcggacggaggagcgggccgcg
gtgggccaggcctcctcgttgagctcgggcaagctcctggagcaggcggccagcagctgc
cagcacgccttcgtcgtcctgtgcatcgagaacagcttcatgaccgcctccaaaaaataa
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