Arthrobacter sp. FB24: Arth_0294
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Entry
Arth_0294 CDS
T00421
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
art
Arthrobacter sp. FB24
Pathway
art03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
art00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Arth_0294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
art03400
]
Arth_0294
Enzymes [BR:
art01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Arth_0294
DNA repair and recombination proteins [BR:
art03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Arth_0294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABK01695
UniProt:
A0JRM5
LinkDB
All DBs
Position
complement(307939..310476)
Genome browser
AA seq
845 aa
AA seq
DB search
MAGSRERVRIQGRELVVTNLDKVMYPETGTTKADVLAYYTAVAPVLVPAAVNRPATRKRW
VNGVGTAEAPGEMFFQKNLEDSTPGWIPRASIRHKERTNQYPLVNDAATLIWLAQMGSLE
IHVPQWRVDPHGNPMNPDRLVLDLDPGEGAGLAECAEVARLARAILRDVGLDPIPVTSGS
KGVHLYAGLDGTQSSDQISEFAHELARALESDHPDLAVSDMKKTLRTGKVLVDWSQNNAA
KTTIVPYSLRGRLRPTVAAPRTWRELASPKLKQLDYREVMRRVKDGKDPFAPVSAGGSHV
RGHPGGGGSAAGPRDSTTADGGSTDPRLEKYRSMRDPEGTPEPFSADRHGADPNAGTIRE
RFVIQEHHASRLHYDFRLERDGVLVSWALPKGVPTSGTQNHLAVQTEDHPMDYLDFEGTI
PKGQYGAGNVTIWDHGYYECDKWIAGKEVIATLTGADGGGLGGTRKFALIRTSRDSDTSK
SPEQAQWLIHLMDRKGHAPAATGTPPATGGPAEAAKQDEPPPDLSPAPDFLPMMASAGTP
ADLRGLDWQFELKWDGIRALIIGDADRIRLISRNGNDMTASYPELTDRSCWPEQSFTADG
EIVAVGPSGRPDFGLLQTRMKLTKAADVAKARAATPVRLMVFDLLSDAGEDLRRMPLRRR
RARLEQLDWPDGCPVHLSEVLDHEVEHILESARELGLEGIMAKRLDGRYVSGERSRSWLK
LKFERTQEVVVGGWRPGKGSRQGSVGSLLVGIPDGAKLRYVGRVGSGFSDRELKELRLQV
DTLSRKTSPFTEVPAADASDAHWVAPGLVGEVTFGEWTGGGKLRHPVWRGWRLDKNADDV
VAESG
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
ttggccggcagtagggaacgtgtccggatccagggccgcgaactggtggtcaccaacctg
gacaaggtgatgtacccggagaccggcaccaccaaggcggacgtcctggcgtactacacc
gccgtagcgccggttcttgtccccgccgcggtgaaccggcccgccacccgcaagcgctgg
gtcaacggggtgggcaccgcggaggcaccgggcgaaatgtttttccagaagaacctggag
gactccacgcccggctggattccgcgagcctcgatccggcacaaggagcgcaccaatcag
tacccgctggtcaacgacgccgccaccctgatctggctggcccagatgggttcgctggaa
atccacgtcccgcagtggcgcgtggacccgcacggcaatcccatgaacccggaccggctg
gtgctggaccttgaccccggcgagggcgccgggctggccgagtgcgccgaagtggcacgg
ttggcccgcgccatcctgagggacgttggcctggatcctatcccggtgaccagcggcagc
aagggcgtccacctctacgccggcctcgacggcacacagagctcggaccagatctccgag
ttcgcccacgaacttgcccgcgccctggaatcggaccacccggacctggctgtcagcgac
atgaagaagaccctccgcacaggcaaggttctggtggactggagccagaacaacgcggcg
aagaccactatcgtcccgtactcccttcgcggccggctccgccccactgtggcggccccc
aggacgtggcgtgagttggcctcccccaagctgaagcaactggactaccgggaggtcatg
cggcgggtcaaggacggcaaggatccgttcgcgccggtctccgcgggcggcagccacgtg
cggggccatcccggcggcgggggctccgccgccgggccccgcgacagtacaactgccgac
ggcggcagcacggacccgaggctggaaaagtaccgctccatgcgggatccggaagggacc
cccgaaccgttcagcgccgaccgtcacggggctgaccccaacgccggcaccatcagggag
cggtttgtgatccaggagcaccacgccagccggctgcattacgacttccggctggagcgg
gacggcgtgctggtgtcctgggcgcttccgaaaggcgtaccaacctcagggacgcagaac
caccttgcagtccagaccgaagaccaccccatggactacctcgatttcgagggcaccatc
cccaaaggccagtacggcgcagggaacgtcaccatctgggaccacggctactacgaatgc
gacaaatggatcgcaggcaaggaagtcatcgcaaccctcacgggggcggacggcggcggc
cttggcgggacccggaagttcgcactgatccggaccagccgggacagcgacacctcgaaa
tcgccggagcaggcccagtggctcatccatctgatggaccgcaaagggcacgcgccggca
gccacaggcactcccccggccacaggtggccccgcagaggcagcgaagcaggacgagccg
ccgccggacctctcgccggcgccggatttcctgccaatgatggccagcgccgggaccccg
gccgacctccgcggcttggactggcagttcgaactgaaatgggacggtatccgtgcgctc
atcatcggcgacgccgaccggatccggctcatcagccgtaacggcaatgacatgaccgca
agctacccggaactgacggaccgcagctgctggccggagcagagcttcaccgccgacggc
gagatcgtcgccgtcggaccttccgggcggcccgatttcgggctgctacagacgcggatg
aaactgaccaaagcggccgacgtcgccaaagcgcgggcagcgactccggtccggctcatg
gtgttcgacctgctgtccgacgcaggcgaggacctccgcaggatgcccctccggaggcgc
cgggcacgtttggagcagttggattggccggacggctgccccgtgcacctgtccgaagtc
ctggaccacgaggtggagcacatcctcgagagcgccagggaacttggcctcgaaggaatc
atggccaagcgccttgacggccgatatgtaagcggcgagcgcagcaggtcctggctgaag
ctgaagttcgagcgcacccaggaagtggtggtgggcggctggcgccccggcaaggggtcc
aggcaaggctccgtggggtcattgctggtgggcatccccgatggcgccaagctgcggtac
gtgggacgcgtgggcagcggattcagcgaccgggaactgaaggaactgcggctgcaggtg
gacacgctgtccaggaagacctcacccttcaccgaagttcccgctgccgacgcctccgat
gcccactgggtggctcccggactggtgggcgaagttaccttcggggaatggaccggcggc
gggaaactaaggcacccggtatggcgcggctggcgcctggacaagaacgccgacgacgtc
gtggcggaatccggatga
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