Arthrobacter sp. FB24: Arth_0948
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Entry
Arth_0948 CDS
T00421
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
art
Arthrobacter sp. FB24
Pathway
art03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
art00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Arth_0948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
art03019
]
Arth_0948
03400 DNA repair and recombination proteins [BR:
art03400
]
Arth_0948
Enzymes [BR:
art01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Arth_0948
Messenger RNA biogenesis [BR:
art03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Arth_0948
DNA repair and recombination proteins [BR:
art03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Arth_0948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_IclR
HTH_Crp_2
MarR_2
DUF3553
PcrA_UvrD_tudor
HTH_31
Motif
Other DBs
NCBI-ProteinID:
ABK02345
UniProt:
A0JTH5
LinkDB
All DBs
Position
complement(1018927..1020615)
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AA seq
562 aa
AA seq
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MAEALAPAEPTSTELRQLAADTFGLPRLRAGQLAGMRALVTGRDVLAVMPTGYGKSAIYQ
VAALQLHQGSASRGPAVVVSPLIALQEDQLDGLLETLGGHAAVAINSGHSDSENNAAWEA
AENGDAVFVFLAPEQLAKTETVERLAALDVPLFVVDEAHCVSSWGHDFRPDYLRLGEVRA
QLGNPPVVGLTATASPPVREEIQQRLHMVDPLVLVHGFDRPNIRLEVIRHHKDKDKRRAV
TRQVAELKSPGLLYAATRKDTEAYAAELTALGLRAEAYHAGRKQGERDRVHQQFLDDELD
VVVATTAFGMGIDKPNVRFVIHADIPDSLDSYYQEIGRSGRDGEPASAVLHYRSEDLGLR
KFFGTHTTDEESLFTVLQALRDAGGPVRQKALAEQTGFSPRKLTGLLNQLQETRAVRTGK
RGIRLEAGAKLPAVVERAVEHAEARQRVDRSRIEMMRGYAETDACRRQFLLGYFGENLPE
PCGNCDTCTDGSAYEEDYDDAAAAAAGGDPFPLQASVVHKEWGPGLVMRHEEDTITVLFE
QAGYKTLSRQAVTDGKLLTLAT
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggccgaggcgcttgcccccgcagaacccaccagcacagaactccgccagctcgccgcg
gacaccttcggactcccccgcctccgcgccggccagctcgccggaatgcgcgccctcgtc
accggccgggacgtcctggccgtgatgcccaccggctacggcaagtccgccatctaccag
gtggccgcgctgcaactgcaccaaggcagcgcaagccgcggtcccgccgtcgtggtttcc
ccgctgatcgccctgcaggaggaccagctggacgggctgctggaaacgctcggcggccac
gccgccgtcgccatcaactccggccacagcgattccgaaaacaacgccgcctgggaagcc
gcggagaacggcgacgcggtgttcgtgttcctcgctcccgaacagctcgccaagaccgaa
accgtagaacggctcgcggccctggacgtcccgctgttcgtggtggacgaggcccactgc
gtctcctcgtggggccacgacttccgccccgactatctacgcctcggcgaggtccgcgcg
caactgggcaacccgcccgtcgtcggccttaccgccactgcttctcctccggtgcgcgag
gagatccagcagcgcctgcacatggtggacccgctggtcctggtgcacggcttcgaccgg
cccaacatccggctggaagtcatccgccaccacaaggacaaggacaagcgccgcgccgtg
acccgccaggtggccgaactcaagagtccgggcctgctgtacgccgccacccgcaaggac
accgaggcctacgcggccgaactcactgccctgggcctgcgcgctgaggcctaccacgcc
ggccggaagcagggcgagcgggaccgcgtccaccagcagttcctcgacgacgaactggac
gtggtggtggccaccaccgccttcggcatgggcatcgacaaacccaacgtccgcttcgtc
attcacgccgacatccccgactcgctggacagctactaccaggagatcggccgctccggg
cgcgacggcgaacccgcctccgccgtcctgcactaccgctccgaggacctgggcctccgc
aagttcttcggcacccacaccacggacgaggaatccctcttcactgttctccaggcactg
cgcgacgccggcgggccggtcaggcagaaggccctcgccgagcagaccggattctctccg
cggaagctcaccgggctgctgaaccagttgcaggaaacccgcgccgtccgcaccggcaag
cgcggcatccggctggaagcgggcgccaagctgcccgcggtggtggaacgcgccgtcgaa
cacgccgaagcacgccagcgggtggaccgctcccgcatcgagatgatgcgcggctacgcc
gagaccgacgcctgccgccgccagttcctgctgggctacttcggcgagaacctccccgag
ccctgcggcaactgcgatacctgcaccgacggctccgcctacgaggaggattacgacgac
gccgcagcggccgccgcgggcggtgacccatttccgctccaagcctcagttgtacataag
gaatgggggcccggcctggtgatgcggcacgaggaggacacgatcacggtgctgttcgag
caggcgggctacaaaacgctgtcccgccaggccgtgacggacgggaaactgctgacgctc
gctacctga
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