Arthrobacter sp. FB24: Arth_3426
Help
Entry
Arth_3426 CDS
T00421
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
art
Arthrobacter sp. FB24
Pathway
art03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
art00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Arth_3426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
art03400
]
Arth_3426
Enzymes [BR:
art01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Arth_3426
DNA repair and recombination proteins [BR:
art03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Arth_3426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABK04801
UniProt:
A0K0I1
LinkDB
All DBs
Position
3856790..3858034
Genome browser
AA seq
414 aa
AA seq
DB search
MNPSKTPAEILDISGTEVRISSPDKVVFPEPGLTKLDLVRYYLAVADGALRGAGGRPMVL
KRFPKGIDAEPFFQKRVPENHPDFIETATLHYASGTSAEEAVIRDAAGLAWVVNLGCLDL
NPHPVRAEDLEHPDELRVDLDPMPGVDWSQIVDVAYVAREVLDDTGLVGWPKTSGSRGLH
ILVRIAPHWSYRDVRLAAETLAREVENRAPGLATARWWKEERGESVFVDFNQNAKDRTVA
SAYSIRPLPDARVSTPLTWDEVRSTRPEQFTVPTVLGRFAEVGDPHAGIDDAAGSLDGLL
ALAAKLGPAEKPPRGGDGSGRRQSVMPLIEVARTRTRPEALAALDEWKSRHADLVPALHP
ADVLVDGMRGSSSLWYRVRVNLQHIPEAERPAQEELIADYDPWAGKEWPGRPGA
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgtcgaagacgccggccgagatcctcgacatttccggcaccgaggttcgcatc
tcgagtccggacaaggtggtttttcccgagcccgggctgacgaagctcgacctggtgcgc
tactacctcgcagtcgcggatggtgcgctgcgcggcgcgggcggccggcccatggtgctc
aagcgcttcccgaagggcatcgacgccgagccgttcttccagaagcgcgtgccggaaaac
caccccgacttcatcgagacggcaacactgcactatgcgtccggaacatcggccgaagag
gccgtgatccgcgatgccgccggcctggcgtgggtggtgaaccttggatgcctcgacctc
aacccccatcccgtacgcgccgaggacctcgagcaccccgacgagctccgggtggacctc
gatccgatgccgggggtcgactggtcgcagatcgtcgacgtcgcgtatgtggcacgggag
gtcctcgacgacacgggactggtggggtggccgaagacgagcggctcgcggggactccat
atcctggtgcgcatcgcgccgcactggtcgtaccgagacgtgcgcctcgccgccgagacc
ctcgcccgcgaggtggagaaccgcgctcccggccttgccaccgcgcgttggtggaaggag
gaacgcggcgagagtgtgttcgtcgacttcaaccagaatgccaaagaccgcaccgtggcc
tccgcatactcgatccgacccctgcccgatgcccgggtctcgacgccgctcacctgggac
gaggtccgctccacccggcccgaacagttcacggtgcccaccgtactcgggcgctttgca
gaggtgggcgacccgcacgccggcatcgacgacgcggccggcagcctcgacgggctcctc
gccctggctgccaagctcggccccgccgagaagccgccgcgcggcggcgacggctccggc
cgccggcagtcggtgatgccgctgatcgaggtggcccgcaccaggaccagacccgaggcg
ctcgcggcactcgacgagtggaagtcccggcatgcggacctcgtcccggccctgcacccg
gccgatgtcctcgtcgacggaatgcgcggatcgagctcgctctggtacagggtgcgggtg
aacctgcaacacatccccgaagcggagcgtccagcgcaggaggagctcatcgccgactat
gacccctgggccggcaaggaatggccggggcgcccgggggcctga
DBGET
integrated database retrieval system
