Arthrobacter sp. PGP41: C3B78_01940
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Entry
C3B78_01940 CDS
T05450
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arth
Arthrobacter sp. PGP41
Pathway
arth03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C3B78_01940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arth03400
]
C3B78_01940
Enzymes [BR:
arth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C3B78_01940
DNA repair and recombination proteins [BR:
arth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C3B78_01940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AUZ33360
UniProt:
A0A2L0QUQ2
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All DBs
Position
complement(416905..419397)
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AA seq
830 aa
AA seq
DB search
MPAAKERVRVAGRELTLTNLDKIIYPETGTTKADVLAYYAAVAHVLVPAAYNRPATRKRW
VNGVGTADKPGEVFFQKNLEDSAPGWLPRAAITHKDRTIYYPMVNDPATLTWFGQINSLE
IHVPQWQVDSHGNQLNPDRLVLDLDPGEGAGLEACVEVALLARTILQDVGLDPVPVTSGS
KGIHLYAALDRSQTSDQISAFARELARALEADHPDLAVSDMKKTLRKGKVLVDWSQNNAA
KTTIVPYSLRGRPTPMVAAPRTWEEISSPGLSHLDYKAVIRRVQEGTDPFAAVDNAGNDP
RLEKYRSMRDPGKTPEPFTGTAGSGNTFVIQEHHASRLHYDFRLEHEGVLVSWALPKGVP
ESGGKNHLAVQTEDHPLDYGSFEGTIPKGEYGAGEVTIWDHGTYELDKWINGREVIATLT
GSEGGGLGGTRKFALIHTGRGQGKDSEGQWLIHLMEPGRPGGRRRHAPPREGQEEPPGTE
SAHEEPHGAPNQDEPRHDELRQEALDKNVAVRPGEYRPMMAASGDAADLEGSSWQFELKW
DGVRAILVGDEDSVRIFSRNGNDVTTTYPELADRTCWPARPFVADGEIVAIGAAGRPDFG
LLQGRMKLTRPAEVARARTAIPVQLMLFDLLHDDGTDLRRLPLAKRRQRLEAFFTASACP
AGLSPVLEDRVDHILESARELGLEGVMAKRTDSRYVSGQRTRTWIKLKVEQTQEVVVGGW
RPGKGGREDTVGSLLVGIPDGTKLQYAGRVGSGFSGRELAELRQTVDRLARKTSPFLDVP
RPDAADAHWIAPELVGEVTYSEWTGTGRLRHPVWRGWRLDKDPAEVVREG
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgctaaggagcgtgtccgggtggcagggcgggaactgaccctcaccaacctg
gacaagatcatctatccggaaacgggcaccaccaaggcggatgtcctggcctactacgcc
gcagtggcccacgtcctggtcccggcggcgtacaacaggccggccaccaggaaacggtgg
gtgaacggcgtggggaccgccgataagcccggcgaggtgttcttccaaaagaaccttgag
gattcggctccgggctggctcccccgggcagccatcacccacaaagaccgcaccatctac
tatccgatggtcaacgaccccgccacccttacctggttcggacagatcaactccctggaa
atccacgtcccgcagtggcaggtggactcccacggcaaccaactgaaccccgacaggctg
gtcctggatttggaccccggcgaaggcgccggcctggaggcgtgtgttgaagtagccctc
ctggcgcgcactatcctccaggacgtgggcctggaccccgtcccggtgaccagcggcagc
aagggcatccacctgtacgccgccctggaccggagccagacctccgaccagatctccgcc
ttcgcccgcgaacttgcccgggcccttgaggccgaccacccggacctggccgtcagcgac
atgaaaaagaccctgcgcaagggcaaggtcctggtggactggagccagaacaacgcggcc
aagacgacgatcgtgccgtactcgctgcgtggccgccccacccccatggtggctgcaccc
cggacctgggaggagatcagctcccccggcctcagccacctggactataaggcggtgatc
cggcgggtgcaggaaggcacggacccgttcgccgccgtcgataacgccggcaatgacccc
cggctggagaagtaccgctccatgcgcgatcccgggaagactccggagcctttcaccggc
acggcgggcagcggaaacacctttgtgatccaggaacaccacgccagccgcctgcactat
gacttccgccttgagcatgaaggcgtgctggtgtcctgggcgctgccgaagggcgtgcct
gagtccgggggcaagaaccacctggcagtgcagaccgaggaccatcccctggactacggg
agcttcgaggggactattcccaaaggggaatacggcgccggcgaggtgaccatctgggac
cacggaacgtatgagctggacaagtggatcaacggcagggaagtcattgccaccctcacc
ggttccgaaggaggagggctgggcgggaccaggaaatttgcgctcatccacacggggcgg
gggcagggaaaggattccgagggccagtggcttatccacctcatggagcccgggcggcct
ggcggacgacggcggcacgcaccgccccgggaagggcaggaggagccgcctggtacggag
tcggcccacgaggaaccacacggggcgccgaaccaggatgagccgcgccatgatgagctg
cgccaggaggcactggataaaaacgttgcggtgcggcccggggaatacaggccgatgatg
gccgcctccggagatgcagcggacctggagggcagcagctggcagttcgaactcaagtgg
gacggggtccgcgccatcctcgtgggagacgaagattcggtacggattttcagccgcaac
ggcaatgatgtcaccaccacttaccctgaacttgcggaccggacctgctggccggcccgg
ccgttcgtcgccgacggtgagatcgtcgccatcggcgcggcaggaaggcccgatttcggg
ctcctgcagggaaggatgaagctcacccggcccgccgaggtcgcacgggcccggactgcc
attcccgtgcagctgatgcttttcgacctgctgcacgacgacggaacggacctccggagg
ctgccgctcgccaagcgccggcaacggctggaggccttcttcaccgcatcagcctgcccc
gcggggctttctccggtccttgaggaccgggtggaccacatcctggagagtgcccgggaa
ctgggcctcgaaggggtgatggccaagcggaccgacagccgctacgtgagcgggcagcgg
acccgtacctggatcaagctgaaggtggagcagacgcaggaggtagtggtgggcggctgg
cgccccggaaaaggcgggcgggaggacaccgtaggctcactgctggttggcatcccggac
gggacaaagctgcagtacgcagggcgggtgggcagcggcttcagcgggcgggaacttgcc
gagctccgccagaccgtggaccggctggcccggaagacctctccgttcctggacgtaccg
cgcccggacgcggcggacgcccactggattgcccccgaactggtcggcgaagtgacctac
agcgagtggacgggtaccgggaggctgcggcaccccgtgtggcggggctggcggctggac
aaggacccggcggaggttgtgcgtgaaggctga
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