Arthrobacter sp. PGP41: C3B78_18970
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Entry
C3B78_18970 CDS
T05450
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arth
Arthrobacter sp. PGP41
Pathway
arth03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C3B78_18970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arth03400
]
C3B78_18970
Enzymes [BR:
arth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C3B78_18970
DNA repair and recombination proteins [BR:
arth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C3B78_18970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AUZ36315
UniProt:
A0A2L0R347
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All DBs
Position
4140757..4142001
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AA seq
414 aa
AA seq
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MSPSKTPAETLTIAGTEVRISSPDKMVFPEPGLTKLDLVQYYLSVAEGALRGAGGRPMVL
KRFPKGIGAEPFFQKRVPENHPDFIDTATLHYASGTSAEEAVIRDAAGLAWVVNLGCLDL
NPHPVRAEDLEHPDELRVDLDPMPGVDWSQIVDVAYVAREVLDDVGLAGWPKTSGSRGLH
ILVRIAPQWSYRDVRLAAETLAREVESRAPGLATARWWKEERGESVFVDFNQNAKDRTVA
SAYSVRPLPDARVSTPLAWNEVRSARPEEFTVLTVPGRFAAMGDPHAGIDDAVGNLDALL
ALAAELGTAEKAPRAGDGSGRRQSVMPLIEVARTRTKPEAQAALEEWKSRHAGLVQALHP
ADVMVDGMRGSSSLWYRVRVNLQHVPEAERPAQEDLIADYDPWAGREWPGQPAS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgtcgaagaccccggccgagaccctcacaatcgccgggacagaggtccgcatc
tcaagccccgacaagatggtgttcccggaaccggggctgacgaagctggacctggtgcag
tattacctttccgtcgcggagggcgcactgcgcggtgcaggcgggcggccgatggtcctc
aagcgtttccccaagggcatcggcgccgagccgttcttccagaagcgcgtgccggagaac
cacccggacttcattgacacggcaacactgcactacgcatccgggacatcggccgaagag
gcggtcatccgtgacgccgcaggcctggcctgggtggttaatctcgggtgcttggacctc
aacccccaccctgtgcgcgcggaggacctggagcaccccgatgagctccgcgtggacctc
gatccgatgccgggcgtggactggtctcagatcgtcgacgtcgcctatgtggcgagggag
gtgctcgatgacgtgggcctggcggggtggccaaagaccagcggatcgcgcgggctccac
atcctggtgcgcatcgcgccgcagtggtcctaccgtgacgtgcggctcgccgccgagacc
ctcgcccgcgaggtggaaagccgcgccccgggcctggccaccgcgcgatggtggaaggag
gagcgcggggagagcgtgtttgtggacttcaaccagaacgccaaagaccgcacggtggca
tcggcctactcggtccggcccctccccgatgcccgggtctccacgccgctggcgtggaat
gaagtccgctccgcccggcccgaagagttcacggtccttacagtgcccgggcgcttcgct
gctatgggcgacccccacgcggggatcgacgacgccgtggggaacctggatgcactcctg
gctcttgctgccgagctgggaaccgccgagaaggcgccacgggccggggacggctccggc
cgccggcagtccgtgatgccgctcatcgaagtggcccggaccaggaccaaacccgaggcg
caggctgcccttgaggagtggaaatcccggcatgccggccttgtccaggccctccatccc
gcagacgtcatggtggacgggatgcgcggatcgagttcgctctggtaccgggtgcgggtg
aacctgcagcatgtcccggaggcggagcgcccggctcaggaggacctcatcgcggactac
gatccatgggctggcagggaatggccgggccagccggcgtcctga
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