Arthrobacter sp. YC-RL1: ATC04_02380
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Entry
ATC04_02380 CDS
T04187
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ary
Arthrobacter sp. YC-RL1
Pathway
ary03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ary00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ATC04_02380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ary03400
]
ATC04_02380
Enzymes [BR:
ary01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ATC04_02380
DNA repair and recombination proteins [BR:
ary03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ATC04_02380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALQ29495
UniProt:
A0A9X0FHH5
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All DBs
Position
complement(523472..525928)
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AA seq
818 aa
AA seq
DB search
MARREQTVTVDGRTLKVSNLDKVLYPETGTTKGEVIDYLQRVAPALLPHAAWRPATRKRW
VDGIGTAQNPGTVFFRKDLEDSAPSWIPTARLEHKTHSNTYPLANDAAVLAWFGQVAALE
IHVPQWRFNASLEQQHPDRLVLDLDPGPGAGLAQCAEVALLCREILEGMDLRPFPVTSGS
KGIHLYAGLDGTATSDQVNEVAKELAASLERKHPRLVVANMKKSLRENKVLVDWSQNNAA
KTTVCPYSLRGRSRPMVAAPRTWEEIESPGLEHLDFHEVLDRLSDGLDPLAALAPSAAQG
TDRLAVYRSKRDAKLTPEPVPHPPAVGKTARAAAPDSAKPVSFVIQEHHARRLHWDFRLE
HEGVLVSWAVPKGPPLQRGIQRLAVMTEDHPLDYGTFEGTIPKGQYGAGEVSIWDAGECT
IEKWRDGKEIIAVLSGREDGGLGGIPRRFVLIQARGMGDQDNWLLQLTKEQPSEDSTVPE
DIPESSLLDEVPKPMLASSGVPEDIIEGDDWCFEMKWDGYRALAKVENGKVKLLSRNGND
MTEDFPELQELAVLAPEGAIVDGEIVALDGSARPSFSLLQQRISHRRKNRLRQAQAIKLN
FMLFDALQLPRSKGGKPENLIGEQYVDRRKYLEHAVSDGQYIKVPPAHTGPTLKAALKTS
LELGLEGVLAKECTGDYEPGRRSGSWVKIKHLLDQEALVIGWTKGQGNRASSIGSLLLAV
PAGDELEFIGRVGTGFSDLQLKEIRERLEKIARKTPPVKHIPAQFQRDAHWVTPKYVAEV
RYSELTKDGRLRHPVWRGWRDDKEPAEVRWEHPGSLMK
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcagggaacaaacggtcaccgttgatggccgcaccctgaaggtcagcaatctg
gataaggtgctgtacccggaaaccgggacgaccaagggcgaagtcatcgactacctgcag
cgggtggccccggcgctgctgccgcatgcggcatggcgcccggcaaccagaaaacgctgg
gtggacgggatcggcacggcacagaacccgggaaccgtgttcttccgcaaggatctggag
gattcggccccaagctggattcccacagcccgtctggagcacaaaacccattccaataca
tatcccctggccaacgatgcggcagtactggcatggttcgggcaagtcgcagcgttggag
atccacgttccccaatggcgtttcaatgcgagcctggaacaacagcatcccgaccggctc
gtgctggatctggatcccggtcccggcgcaggcttggcccagtgcgccgaagtggctttg
ctatgccgcgaaatccttgaaggcatggacctgcggccttttccggtgacctccggatcc
aagggaatccacctttacgccggtcttgacggcacggcaacctccgaccaggtcaatgag
gtggccaaggaactcgccgcctcgctggaacgcaagcacccccggcttgtggtggcaaat
atgaagaaatccctgcgcgagaacaaggtgctggtggattggagccagaataacgccgcg
aaaaccacggtatgcccgtattcgctgcgcgggcgttcgcgtcccatggtggccgcgcct
cgcacatgggaagaaatcgagtcccccggtctggagcacctagacttccacgaagtattg
gaccggctgtccgacggccttgatcccttggcggccctggcgccttcggctgcgcagggc
acggatcggctcgcggtctaccgctccaagcgcgatgcaaagctcactccagaacccgtg
ccccacccgcccgcggtcgggaaaaccgcgcgggctgcggctccggattcggcaaaaccc
gtgtctttcgtgatccaagagcaccatgcccgcaggctgcactgggatttcaggctggaa
cacgagggggtcctggtctcctgggccgtcccgaaggggcccccgctccagaggggaatc
cagcggctggctgtaatgaccgaagaccaccccttggactacggaaccttcgaaggaacg
attcccaagggccagtatggcgccggagaggtgtcgatctgggatgccggtgaatgcacc
attgagaaatggcgggatggcaaggagatcatcgcggtgctgtccggacgcgaagacgga
gggctcggcggcattccgcgccgcttcgtgctgatccaggctcgcggcatgggagaccag
gacaattggctgctgcagctcaccaaggagcagccttccgaggattcgacggttccggaa
gacatccctgaatccagcctgctggacgaggttcccaaacccatgctggccagctccggg
gtgccggaggacatcatcgaaggcgacgactggtgcttcgaaatgaaatgggacgggtac
cgcgccttggccaaggtcgagaacgggaaggtgaaactgctcagccgcaacggcaacgac
atgaccgaagattttcccgagctacaggaacttgcggtgcttgcacccgagggcgcgatc
gtggacggcgaaatcgtcgccctggacggttcagcgcgcccgagcttttccctgttgcag
cagcgcatctcgcatcggcgcaagaaccggctccggcaagcgcaggccattaagctcaac
ttcatgcttttcgatgccctgcagcttccccggagcaagggcggaaagcccgagaacctg
atcggtgaacaatatgtggatcgccgcaaataccttgaacatgcggtctccgacggacag
tacattaaggtacctcctgctcataccggacccaccttgaaggccgcgttgaagacaagc
ctcgagctgggattggaaggggtgctggccaaggaatgcaccggcgactatgaaccgggc
cggcgcagcggcagctgggtgaagatcaagcacctgctggatcaggaggccctggttatc
ggatggaccaagggacagggaaaccgcgcgtcaagtatcggctcgctgctgctggccgtc
cccgccggcgatgagttggagttcatcggtcgggtcggcacggggttctcggatctgcag
ttgaaggagatccgcgaacgtctggagaagatcgcgcgcaagaccccaccggtcaagcac
atcccggcgcagttccagcgcgatgcgcactgggtaaccccgaaatatgtggcggaggtc
cgttacagcgaactgacaaaggacgggcggctgcggcatccggtctggcgcggttggcga
gatgacaaggagcccgctgaggtgcgctgggaacaccccggcagcctcatgaagtaa
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