Arthrobacter sp. ATCC 21022: AUT26_10030
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Entry
AUT26_10030 CDS
T04477
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arz
Arthrobacter sp. ATCC 21022
Pathway
arz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AUT26_10030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arz03400
]
AUT26_10030
Enzymes [BR:
arz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AUT26_10030
DNA repair and recombination proteins [BR:
arz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AUT26_10030
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMB40506
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Position
complement(2227544..2228788)
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AA seq
414 aa
AA seq
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MTPSKTPAEILTIDDVDVRVSSPDKLVFPEPGLTKLDLVRYYLSVAEGALRGAGGRPMVL
KRFPKGIDAEPFFQKRVPENHPPFIDTATLHYSSGTSAEEAVIRDAAGLAWVVNLGCLDL
NPHPVRAEDLDHPDELRIDLDPMPGVDWKQIVDVAYVAREVLDDVGLVGWPKTSGSRGLH
IMVRIAPDHDYRQVRLAAETLAREVGNRAPGLATARWWKEERGESVFVDFNQNAKDRTVA
SAYSIRPLPDARVSTPLTWKELATIRPDQFTVLTVPGRYKDIGDPHDGIDQAPGNLEGLL
ALAEELGPAEKAPRAGDGSGRRKSTMPLIEVARTKTKPEALEALEEWKANHADVVPELHP
ADVLVDGMRGSSSLWYRVRVNLQHVPEDKRPQQEKLIADYDPWAGKEWSGGPER
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgactccgtccaagaccccggccgagattcttacgatcgatgatgtggacgtccgcgtc
tccagtccggacaagctggtcttcccggagccgggactcaccaaactggaccttgtccgg
tactacctgtcggttgccgaaggcgcactccgtggagccggcgggcggcccatggtcctc
aagcgcttccccaagggcatcgacgcggagccgttcttccagaagcgcgttccggagaac
cacccacccttcatcgacaccgcaacactgcattactcctccggcacttcggccgaggaa
gccgtgatacgggacgccgccggtctcgcgtgggtggtgaaccttggctgccttgacctc
aacccccatcccgtgcgggccgaagacctcgaccaccccgacgaactccggatcgacctt
gatccgatgccgggcgtggactggaaacaaatagtggatgtcgcctacgtggctcgggag
gtgctggacgacgtcggactggttggctggcccaagaccagtggctcccgcggactccac
atcatggtccggatagcgccggaccatgactaccggcaggtccggctggctgccgaaacc
ctcgcgcgcgaagtcgggaaccgggcgcccgggctggccacggcccggtggtggaaagag
gaacggggcgagagcgtatttgttgacttcaaccagaacgccaaagaccgcaccgtggcc
tccgcctactccatcaggcccctgccggacgccagggtctccacgccactgacgtggaaa
gaactagcaaccatccggccggaccagttcacagtcctcaccgtccctggcaggtacaag
gacatcggcgatccccacgatggcatcgaccaagccccgggaaacctggagggcctcctc
gcgctcgcggaggaattgggcccggcggaaaaggcacccagggcaggcgacgggtccgga
cgccggaaatcgaccatgccgctcatcgaagtagcccggaccaaaaccaagccggaagcc
ctcgaagccctggaggagtggaaagccaaccacgcggacgtcgttcccgagttgcatccg
gcggacgtcctggtggatgggatgcgcggctcaagctcgctctggtaccgcgttcgggtg
aacctccagcatgtccccgaggacaagcggccacagcaggagaagctgatcgctgactac
gatccgtgggcgggcaaggagtggtccggcggaccggagaggtaa
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