Aeromonas salmonicida subsp. salmonicida A449: ASA_0632
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Entry
ASA_0632 CDS
T00500
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asa
Aeromonas salmonicida subsp. salmonicida A449
Pathway
asa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASA_0632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asa03019
]
ASA_0632
Enzymes [BR:
asa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ASA_0632
Messenger RNA biogenesis [BR:
asa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASA_0632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABO88795
UniProt:
A4SIS3
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All DBs
Position
648026..649246
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AA seq
406 aa
AA seq
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MTFSELDLHPALLAALPATLHTPTRIQQLAIPVVLAGQDLLALAQTGSGKTLAFGLPLLQ
RLDPASSLVQGLVVVPTRELAMQVSAALQGMADALGLRILTLCGGVAQERQQAELALGPQ
LLVATPGRLRDLLTQQVLGLDGLQQLVLDEADRLLEMGFWPDIQWLMNEMPAERQTLLFS
ATLPAELNAFAHSLLTEPTRIEANPLNSLVNEIEERLYLVNKSSKVPALISLLKEQAWPQ
VLVFISARDDADGVARKLARAGIPVAALHGEKEQAVREQALDDFKAGKVLVLVATDLMAR
GIHVEALPVVINLDLPASAPVYVHRIGRTARAGCEGLAISLVCHGESDILAAIRTLTGRE
LPLGELAGFPVTDLPASGEGKRPPRDKQANRRTANKRSVKQFKGKV
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgacctttagcgaactcgatctccatcccgccttgctggctgccttgcctgccaccctg
cacacgccgactcgcatccagcagcttgcaatacccgtggtattggcggggcaggatctg
ctggcgctggcccagaccggcagcggcaagacactggcgttcgggttaccgttgctgcaa
cggctggatcccgcctccagcctggtgcagggactggtagtggtgccgacccgcgagctg
gcgatgcaagtgagcgctgcgctgcaagggatggctgacgctctgggattgcggatcctc
accctgtgcggtggcgttgcacaggagcgacaacaggcagagctggcgctggggccgcaa
ctgctggtggcgacgccggggcgactgcgggatctgctcactcagcaagtgctggggctg
gatggcctgcaacagctggtgctggatgaggcggatcgcctgctggagatgggtttctgg
cccgatatccagtggctgatgaatgagatgcccgccgagcgtcagaccctgctcttctcc
gctaccctgcctgccgagctgaatgcctttgcccatagcctgctgacagaaccgactcgc
attgaggccaatcccctcaacagcctggtgaacgagatcgaggagcgactctatctggtc
aataagagcagcaaggtgcctgcgctgatcagcttgctcaaggagcaggcctggccgcag
gtgctggtgttcatcagcgcgcgggacgatgccgacggcgtggccaggaagctggccagg
gcggggatcccggttgccgccctgcatggggagaaggaacaggcggttagagagcaggcg
ctcgacgatttcaaggctggcaaggtgctggtgctggtggccaccgacctgatggcgcgg
ggcatacatgtggaggcattgcctgtggtgatcaacctggacttgcccgccagcgccccc
gtttatgttcaccgtatcggccgtaccgcccgcgccgggtgcgaggggctggccatctcg
ctggtgtgtcacggcgagagcgatatcctggcggcgatccgcaccctgaccggccgtgag
ctgccgctgggggaactcgcaggtttcccggtgaccgacctgcccgccagcggggagggc
aagcgcccacctcgcgacaagcaggctaaccgtcgcaccgccaacaagcgcagcgtcaag
cagttcaagggcaaggtctag
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