Hoyosella subflava: AS9A_4180
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Entry
AS9A_4180 CDS
T01514
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
asd
Hoyosella subflava
Pathway
asd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
asd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AS9A_4180 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asd03400
]
AS9A_4180 (ligD)
Enzymes [BR:
asd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AS9A_4180 (ligD)
DNA repair and recombination proteins [BR:
asd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AS9A_4180 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AEF42613
UniProt:
F6EK72
LinkDB
All DBs
Position
complement(4306041..4308293)
Genome browser
AA seq
750 aa
AA seq
DB search
MSKLVIDGYTVALTHLDKVLYPETGTTKGEIIAYYEAIASVMLPHIRDRPATRKRWPDGV
TATPFFEKNIPFSAPDWIPRLPLEHKSRTVTYPLLNSTAALVWIGQQAALEVHVPQWIAR
SGKPGPANRIVFDLDPGPGTTLADCAVVAKRIREIFREIGLPVYPVTSGSKGLHLYVPLV
DPVSSAQASRVAQSVAASLERALPELVTATMSKAARPGKIFVDWSQNSAAKTTIAPYSLR
GQSHPYVAAPRSWEELDDPHIAHLTFSDVLRRVDEFGDLLSPERPRPSESGPDRLALYRA
KRDRALTPEPVPEPSENLKENESEPLFVIQEHHARRLHYDFRLERDGVLVSWAVPKNIPD
TPDVNHLAVQTEEHPMAYGSFAGEIPRGQYGAGEVKIWDRGTYTLEKWRDDEVIVELHGK
RAQGRYALIKTGGKNWLMHKMKAPDANRRVRGIPRGLSPMLAKSASIKRLDAGEWAFEGK
WDGYRAIAEISEGTVRLLSRSGIDVTRDYPQLRQLSEDLGGHEVVLDGELVGFGEEGVTS
FARLREAPREATYLVFDVLYLDGTSLTRKPWSDRRKVLEAVAGLLRCASVPPLLTGSAED
AIAESVQRGWEGVIAKRRDSIYLPGQRGTAWLKHKNWRTQNVVVGGWKPGEGGHGGGIGA
LLVGVMRDGKLRYAGRVGTGWSEKQRAELLERLTLLVQEKSPFADWASEPESSETQLRDV
VWVRPEMEGTVRFQEWTSARRLRHPVWMRS
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaactggtcatcgacgggtataccgttgcgctcacgcatctcgacaaagtgctc
taccccgaaacgggaaccaccaagggtgagattatcgcttactacgaggcaatcgcctcg
gtgatgctgccgcacattcgtgaccggcctgcgacccgaaaacgctggccggacggggtg
acggcgacgccattttttgagaagaacattccgttctccgccccagactggattccgcgt
cttcccctcgagcacaagtcgcgcacggtgacgtatccgttgctcaattccactgccgcg
ctcgtgtggatcggtcagcaggcggcactggaagtgcatgtgccccagtggatcgctcgg
tcgggaaagccggggccagctaaccggatcgtgtttgacctcgaccccgggccaggcacg
acgctggcggactgcgcggtcgtcgcgaaacgtattcgggagatcttccgcgagatcggc
ctgcctgtctatccggtcacgtcaggcagtaagggactgcacctctatgtaccgctcgta
gatcccgtgagctccgcgcaggcgtcccgtgttgcgcaatccgttgcggcgagcctcgaa
cgtgcgctccccgaactggttaccgccaccatgtccaaagcggcgcgtcccggcaagatc
ttcgtcgactggagccagaactcggcagcaaaaacgaccatcgcgccgtattcactacgg
ggccagtcacacccgtacgtcgcggccccccgttcctgggaagaactcgacgacccgcac
atcgcacacctgacgttttcggacgtgctgcgccgcgtcgatgaattcggggacctgctg
tcacctgagcggccgcggccaagtgagtcaggcccggatcggcttgctctgtaccgggcg
aaacgcgaccgcgcgctaaccccggaaccggtcccggaaccgagtgaaaatctcaaggaa
aatgaaagtgagccactcttcgtcatccaggaacatcatgcccgccgactgcactacgac
ttcaggctcgagcgcgacggtgtactcgtctcgtgggcggtgccgaagaacatccccgac
accccggacgtcaaccaccttgccgtgcagaccgaagaacatccgatggcgtacgggagc
ttcgcgggggagatcccgcgtggccagtacggcgcgggcgaggtgaagatctgggatcgc
ggcacatacacgctggaaaagtggcgcgacgatgaggtgatcgtcgaacttcatgggaaa
cgcgcccaaggcagatatgcgttgatcaaaacgggcggcaagaactggctgatgcacaag
atgaaggcgccggacgcgaatcgccgcgtgcggggcataccgcgcggcttgtcaccgatg
cttgccaagtcggcgtccataaagcgacttgacgccggggagtgggcgttcgagggcaag
tgggacggttaccgtgcgatcgccgagatcagcgagggcacggtgcggctgctgagccgc
agcggaattgatgtgacgcgcgactacccacaactgcggcagctcagcgaggacctgggt
ggtcatgaggtggtcctcgatggcgaactagtcggtttcggcgaagagggggtgacgagc
ttcgcgcggctcagggaagcaccacgtgaggcgacctacctggttttcgacgtgctttat
ctcgacggcacctcgctgacacggaaaccctggtccgaccggcggaaggtgctcgaagcc
gttgctggtctcttgcggtgtgcgagtgttccgccgctgctcacgggttcggccgaggat
gcgatcgctgagtcggttcagcgaggctgggaaggcgtgatcgcgaagcgccgcgactcg
atttatctgcccggtcaacgaggcaccgcctggctcaagcacaagaactggcggacccaa
aacgtcgttgtgggtggctggaaaccaggcgaaggaggccacggtggcggcatcggcgcc
ttactggtgggagtgatgcgggatgggaagcttcgctacgcgggacgcgtaggaacgggg
tggtcggagaaacagcgcgccgaactgcttgagcggttgacgctccttgtgcaggaaaaa
agcccgttcgccgactgggcaagcgaacctgagtcgtctgaaacccagttgcgtgatgtc
gtgtgggtcaggcccgagatggaggggaccgtgcggttccaggagtggaccagcgcgcga
cggctgcgccatcccgtctggatgcgtagctaa
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