KEGG   Amycolicicoccus subflavus: AS9A_4180Help
Entry
AS9A_4180         CDS       T01514                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase LigD
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
asd  Amycolicicoccus subflavus
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:asd00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AS9A_4180 (ligD)
Enzymes [BR:asd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AS9A_4180 (ligD)
DNA repair and recombination proteins [BR:asd03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AS9A_4180 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(4306041..4308293)
Genome map
AA seq 750 aa AA seqDB search
MSKLVIDGYTVALTHLDKVLYPETGTTKGEIIAYYEAIASVMLPHIRDRPATRKRWPDGV
TATPFFEKNIPFSAPDWIPRLPLEHKSRTVTYPLLNSTAALVWIGQQAALEVHVPQWIAR
SGKPGPANRIVFDLDPGPGTTLADCAVVAKRIREIFREIGLPVYPVTSGSKGLHLYVPLV
DPVSSAQASRVAQSVAASLERALPELVTATMSKAARPGKIFVDWSQNSAAKTTIAPYSLR
GQSHPYVAAPRSWEELDDPHIAHLTFSDVLRRVDEFGDLLSPERPRPSESGPDRLALYRA
KRDRALTPEPVPEPSENLKENESEPLFVIQEHHARRLHYDFRLERDGVLVSWAVPKNIPD
TPDVNHLAVQTEEHPMAYGSFAGEIPRGQYGAGEVKIWDRGTYTLEKWRDDEVIVELHGK
RAQGRYALIKTGGKNWLMHKMKAPDANRRVRGIPRGLSPMLAKSASIKRLDAGEWAFEGK
WDGYRAIAEISEGTVRLLSRSGIDVTRDYPQLRQLSEDLGGHEVVLDGELVGFGEEGVTS
FARLREAPREATYLVFDVLYLDGTSLTRKPWSDRRKVLEAVAGLLRCASVPPLLTGSAED
AIAESVQRGWEGVIAKRRDSIYLPGQRGTAWLKHKNWRTQNVVVGGWKPGEGGHGGGIGA
LLVGVMRDGKLRYAGRVGTGWSEKQRAELLERLTLLVQEKSPFADWASEPESSETQLRDV
VWVRPEMEGTVRFQEWTSARRLRHPVWMRS
NT seq 2253 nt NT seq  +upstreamnt  +downstreamnt
atgtcgaaactggtcatcgacgggtataccgttgcgctcacgcatctcgacaaagtgctc
taccccgaaacgggaaccaccaagggtgagattatcgcttactacgaggcaatcgcctcg
gtgatgctgccgcacattcgtgaccggcctgcgacccgaaaacgctggccggacggggtg
acggcgacgccattttttgagaagaacattccgttctccgccccagactggattccgcgt
cttcccctcgagcacaagtcgcgcacggtgacgtatccgttgctcaattccactgccgcg
ctcgtgtggatcggtcagcaggcggcactggaagtgcatgtgccccagtggatcgctcgg
tcgggaaagccggggccagctaaccggatcgtgtttgacctcgaccccgggccaggcacg
acgctggcggactgcgcggtcgtcgcgaaacgtattcgggagatcttccgcgagatcggc
ctgcctgtctatccggtcacgtcaggcagtaagggactgcacctctatgtaccgctcgta
gatcccgtgagctccgcgcaggcgtcccgtgttgcgcaatccgttgcggcgagcctcgaa
cgtgcgctccccgaactggttaccgccaccatgtccaaagcggcgcgtcccggcaagatc
ttcgtcgactggagccagaactcggcagcaaaaacgaccatcgcgccgtattcactacgg
ggccagtcacacccgtacgtcgcggccccccgttcctgggaagaactcgacgacccgcac
atcgcacacctgacgttttcggacgtgctgcgccgcgtcgatgaattcggggacctgctg
tcacctgagcggccgcggccaagtgagtcaggcccggatcggcttgctctgtaccgggcg
aaacgcgaccgcgcgctaaccccggaaccggtcccggaaccgagtgaaaatctcaaggaa
aatgaaagtgagccactcttcgtcatccaggaacatcatgcccgccgactgcactacgac
ttcaggctcgagcgcgacggtgtactcgtctcgtgggcggtgccgaagaacatccccgac
accccggacgtcaaccaccttgccgtgcagaccgaagaacatccgatggcgtacgggagc
ttcgcgggggagatcccgcgtggccagtacggcgcgggcgaggtgaagatctgggatcgc
ggcacatacacgctggaaaagtggcgcgacgatgaggtgatcgtcgaacttcatgggaaa
cgcgcccaaggcagatatgcgttgatcaaaacgggcggcaagaactggctgatgcacaag
atgaaggcgccggacgcgaatcgccgcgtgcggggcataccgcgcggcttgtcaccgatg
cttgccaagtcggcgtccataaagcgacttgacgccggggagtgggcgttcgagggcaag
tgggacggttaccgtgcgatcgccgagatcagcgagggcacggtgcggctgctgagccgc
agcggaattgatgtgacgcgcgactacccacaactgcggcagctcagcgaggacctgggt
ggtcatgaggtggtcctcgatggcgaactagtcggtttcggcgaagagggggtgacgagc
ttcgcgcggctcagggaagcaccacgtgaggcgacctacctggttttcgacgtgctttat
ctcgacggcacctcgctgacacggaaaccctggtccgaccggcggaaggtgctcgaagcc
gttgctggtctcttgcggtgtgcgagtgttccgccgctgctcacgggttcggccgaggat
gcgatcgctgagtcggttcagcgaggctgggaaggcgtgatcgcgaagcgccgcgactcg
atttatctgcccggtcaacgaggcaccgcctggctcaagcacaagaactggcggacccaa
aacgtcgttgtgggtggctggaaaccaggcgaaggaggccacggtggcggcatcggcgcc
ttactggtgggagtgatgcgggatgggaagcttcgctacgcgggacgcgtaggaacgggg
tggtcggagaaacagcgcgccgaactgcttgagcggttgacgctccttgtgcaggaaaaa
agcccgttcgccgactgggcaagcgaacctgagtcgtctgaaacccagttgcgtgatgtc
gtgtgggtcaggcccgagatggaggggaccgtgcggttccaggagtggaccagcgcgcga
cggctgcgccatcccgtctggatgcgtagctaa

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