Actinoplanes sp. SE50/110: ACPL_5318
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Entry
ACPL_5318 CDS
T02044
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ase
Actinoplanes sp. SE50/110
Brite
KEGG Orthology (KO) [BR:
ase00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ase03019
]
ACPL_5318 (hrpA)
Enzymes [BR:
ase01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACPL_5318 (hrpA)
Messenger RNA biogenesis [BR:
ase03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACPL_5318 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
NACHT
AAA_16
nSTAND3
Sugar-bind
ABC_tran
T2SSE
SLFN-g3_helicase
AAA_30
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AEV86205
UniProt:
G8S5K3
LinkDB
All DBs
Position
complement(5801212..5805135)
Genome browser
AA seq
1307 aa
AA seq
DB search
MSTSPSAPPAELRSRITQLLPRDEHRIGRRLEGTRRIRDDAAKSAALAEITAEVERAEAR
LASRAATVPPITYPEALPVSARKDDIAAAIRDHQVVVVAGETGSGKTTQIPKICLELGRG
VRGQIGHTQPRRIAARTVAERIAEELDRPLGATVGYKVRFTDQAGEDTLVKVMTDGILLA
EIQTDRMLRRYDTLIIDEAHERSLNIDFILGYLRDLLPKRPDLKLIITSATIETQRFAEH
FADAAGQPAPVIEVSGRTYPVEVRYRPLITTQVIDDDEIREEPIDQIEGIAAAVDELPAD
GDILVFLSGEREIRDTADALTRKDLRNTEVVPLYGRLSAAEQHRVFERHTGRRIVLATNV
AETSLTVPGIRYVIDPGTARISRYSSRLKVQRLPIEAVSQASANQRKGRCGRTSDGICIR
LYSEEDFDGRPEFTEPEILRTNLASVILQMTNLGLGDLAKFPFIDPPDKRNITDGIKLLE
ELGALQDRKLTPIGRQLAQLPVDPRLARMVIEADRQECVAEVMVIAAALSIQDPRERPAD
RQQQADEKHSRFTDKESDFFTYLNLWRYLRQKQQELSGNQFRRLCRAEFLNYLRVREWQD
IYAQLRQVVRTLELNFREDWESGVAPQPVHTALLAGLLSHIGLKDTDKREYLGARGAKFA
IFPGSALFKRQPRWLMSAELVETSRLWARVNARIEPEWAEKLAPHLVKHSYSEPHWDRKM
GAVMAFEKVTLYGLPIIPRRRVGYGKIDPVVARDLFIRHALVEGDWDTHHKFFEANRQLL
RRITELENRARRRDIAVDDEAVHALYDARIPADIVSSRHFDGWWKKARHENPDLLTFTRE
DLVNAGRDTVDPNAFPDAWLAGGVKLPLLYEFEPNSHADGVTVRVPLDLINKIDADDFGW
SVPGFRKDVVIALIRALPKALRTSFVPVPDWADAVLDRVPVRRGPLPDAIAGELRRLSGT
IVPRDAWRPDQVPDHLRMNFRIVNEAGEVVAEGRDLDVLRRALAPKVQATISRAAGNLER
TGITTNDFGAIPHRVAQQRGGYAVTVWPALVDEGASVGVKVFETEAEQRVAMRAGTRRLL
LLTLPPAARFLQGRLDNRAKLELSRANPYRSIADLLDDCAGAAVDRLVADAGGPVWSSVE
FASLRDTVREDLVDAVANVVTQVQAVLSTAYDVDQRIRQLKDPGLLPALADIRQQLKGLV
YPGFVTETGWRQLHHLPRYLKAIAHRMDRLGGGVGRDRQLTTQIHEIETEYRELLAEAPP
GGPAAEGLREIRWMLEELRVSFFAQSLGTAYPVSDKRIFKAMDALPL
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacatcgccctccgctccgccggccgagctccgcagccggatcacccagctcctg
ccccgtgacgaacaccggatcgggcgccgtctcgaggggacccggcggatccgcgacgac
gccgccaagtccgccgcgctcgccgagatcaccgccgaggtcgagcgggccgaggcgcgc
ctggcgagccgggccgccaccgtgcccccgattacctatccggaggcgctgccggtcagc
gcccgtaaggacgacatcgccgccgcgatccgcgaccaccaggtcgtggtggtggccggc
gagaccggctccggcaagaccacccagattccgaagatctgcctggagctgggccggggc
gtgcgcggccagatcgggcacacccagccgcgccggatcgcggcccgcacggtcgccgag
cggatcgccgaggagctggaccggccgctcggcgccacggtcggctacaaggtgcgcttc
accgaccaggccggcgaggacacgctggtcaaggtgatgaccgacggcatcctgctggcc
gagatccagaccgaccggatgctgcgccgctacgacacgctgatcatcgacgaggcgcac
gagcgcagcctcaacatcgacttcatcctcggttacctgcgcgacctgctgcccaagcgg
cccgacctcaagctgatcatcacctcggcgacgatcgagacgcagcgcttcgcggagcac
ttcgccgacgccgccggccagccggccccggtgatcgaggtctccgggcgcacctacccg
gtcgaggtccgctaccgcccgctgatcaccacccaggtgatcgacgatgacgagatccgt
gaggagccgatcgatcagatcgagggcatcgccgccgccgtcgacgaactgcccgccgac
ggcgacatcctggtgttcctgtccggcgagcgggagatccgcgacaccgccgacgcgctc
accaggaaggacctgcgcaacaccgaggtcgtcccgctgtacggccggctcagcgccgcc
gagcagcaccgggtgttcgagcggcacaccggccggcggatcgtgctggccaccaacgtc
gccgagacgtcgctgaccgtgcccggcatccgctacgtgatcgaccccggcaccgcccgg
atcagccggtactccagccggctcaaggtgcagcggctgccgatcgaggcggtctcgcag
gccagcgccaaccagcgcaagggccgctgcggccgcacgtcggacggcatctgcatccgg
ctgtactcggaggaggacttcgacggccggccggagttcaccgagccggagatcctgcgc
accaacctggcctcggtcatcctgcagatgaccaacctgggcctcggcgacctggcgaaa
ttcccgttcatcgacccaccggacaagcggaacatcaccgacggcatcaagctgctcgag
gagctcggcgccctgcaggaccgcaagctcaccccgatcggccgccagctggcccagctg
ccggtcgacccgcggctggcccgcatggtgatcgaggcggaccgccaggagtgcgtggcc
gaggtgatggtgatcgcggcggcgctgtcgatccaggacccgcgcgagcggccggccgac
aggcagcagcaggccgacgagaagcacagccggttcaccgacaaggaatcggacttcttc
acctacctcaacctgtggcgctatctgcggcagaagcagcaggagctgtccggcaaccag
ttccgccggctctgccgcgccgaattcctcaactatctgcgcgtgcgggaatggcaggac
atctacgcacagctgcgccaggtcgtccgtacgctcgagctgaatttccgcgaggactgg
gagtcgggagtcgcgccgcagccggtgcacaccgcgctcctcgcgggtctgctgagccac
atcggcctgaaagacaccgacaagcgcgaatatctcggggcgcgtggcgcgaaattcgcg
atcttccccggatcggcgctgttcaagcggcagccgcgctggctgatgtcggccgagctg
gtggagaccagccggctgtgggcccgggtaaacgcccgaatcgagccggagtgggccgag
aaactcgccccgcacctggtgaaacactcctacagcgagccgcactgggatcggaagatg
ggcgccgtgatggcgttcgagaaggtcaccctctacggtctgccgatcattccgcggcgc
cgggtcggctacggaaagatcgatccggtggtggcccgggacctgttcatccggcacgcg
ctggtcgagggcgactgggacacgcaccacaagttcttcgaggcgaaccggcaattgctg
cgccggatcaccgagctggagaatcgtgcccggcggcgtgacatcgcggtcgacgacgag
gcggtccacgcgctgtacgacgcgcgcatcccggccgacatcgtctcctcccggcacttc
gacggctggtggaagaaggcccgccacgagaacccggatctgctcaccttcacccgggaa
gacctcgtcaacgccgggcgggacaccgtcgaccccaacgccttcccggacgcgtggctg
gccggtggcgtcaaactcccgctcctctacgagttcgagccgaactcgcatgccgacggc
gtgaccgtccgggtgccgctcgacctgatcaacaagatcgacgcggacgacttcggctgg
tccgtgcccggcttccgcaaggacgtggtgatcgcgctgatccgggccctgcccaaggcg
ctgcgcaccagcttcgtcccggtgccggactgggccgacgcggtcctcgaccgggtgccg
gtgcgccgcggcccgctgcccgacgcgatcgcgggcgagttgcgccggctcagcggcacc
atcgtgccccgcgacgcgtggcgccccgaccaggtccccgaccacctgcggatgaacttc
cggatcgtgaacgaggcgggcgaggtggtcgccgaaggccgcgacctggacgtgctgcgg
cgcgccctggcgcccaaggtgcaggccaccatctcccgggcggccggcaacctcgaacgc
accggcatcaccaccaacgacttcggggcgatcccgcaccgggtcgcccagcagcgcggc
ggctatgcggtgaccgtctggccggccctggtcgacgagggcgccagcgtcggcgtcaag
gtcttcgagaccgaggccgagcagcgggtcgcgatgcgcgccggcacccggcggctgctg
cttctcacgctgccgccggccgcccggttcctgcagggccgcctggacaaccgggccaaa
ctcgaactgtcccgggccaacccgtaccggtcgatcgccgacctgctcgacgactgcgcg
ggcgccgcggtggaccggctggtcgccgacgccggcgggccggtctggtcgtcggtcgag
ttcgcctcgctgcgcgacaccgtccgcgaggacctggtcgacgcggtcgccaacgtggtc
acccaggtgcaggcggtgctctccacggcgtacgacgtcgatcagcggatcaggcagctc
aaggaccccgggctgctgcccgcgctggccgacatccggcagcagctcaagggcctggtg
tacccgggcttcgtgaccgagaccggctggcgccagctgcaccacctgccgcgctacctc
aaggcgatcgcccaccggatggaccggctgggcggcggcgtcggccgggaccgtcagctg
accacgcagatccacgagatcgagacggagtaccgcgagctgctcgccgaggcgccgccc
ggcgggccggccgcggaggggctgcgggagatccggtggatgctcgaggagctgcgggtg
agcttcttcgcgcagtccctcggcaccgcctatcccgtctctgacaagcggatattcaag
gcgatggacgcgctgccgctgtag
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