Aggregatibacter segnis: NCTC10977_01496
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Entry
NCTC10977_01496 CDS
T06075
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
aseg
Aggregatibacter segnis
Pathway
aseg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aseg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC10977_01496 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aseg03400
]
NCTC10977_01496 (recB)
Enzymes [BR:
aseg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC10977_01496 (recB)
DNA repair and recombination proteins [BR:
aseg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC10977_01496 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
ResIII
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SQH64947
LinkDB
All DBs
Position
1:complement(1533211..1536873)
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AA seq
1220 aa
AA seq
DB search
MQQLNPISIPLNAVSLIEASAGTGKTYTMGSLYLRLLLQAGENTFPYALNVEQILVVTFT
EMATEELKRKIRERIYDAKQKLTAYQQTQDSAVFGQDDFLRELVASITDLPLAIQRLTLA
EQNMDLAAIYTIHGFCRRMLMQYAFNSGVHFNLELSGEEDELLLHLAQKIWREHFYSQPY
AVVEFIQKNLVSPSNIVTKIKKFAGIELKLPEKRPHFFEGTFEEFLSKLTDYSQVLIAQT
QELKQKWLEKEVEITELIETEINTKYKNTKEQKLNRRSFTSANRPKWLAAMKRWAGIEKA
DFPDCFYRFGQTAMDEQKGEEAQEALSHPLFIKIDELLAFSEQQALLSQALWFHYLETLN
GQLAEYKLNHSEKSFYDLLRLLKEALCHLNNTEFAQLIRYQYPFAMIDEFQDTDAVQYQI
FSKVYVEPLRLEPTSDNGFIMIGDPKQAIYKFRGADIFTYFKAADEAQHRFNLGKNYRSH
QDVVQCVNHLFDFHEPPPFLYNKIQFLPVESKDDHPKFWLNGEVEPAVRFYVDEASVKEN
MAKACAVSIQHWLQSAVENNADFRSDEKGIEKTLKPESIAVLVRSRKEADLVKNALRRLG
IASVFLSENSNVFDSNAGKDLLLILTACLNPFSERNILNAVATAIFAQTAADIQRIRLDE
NRWEYWVEKFIHYQKTWQKQGVLVMLHQLFLQEKITEKLYPTVDGKRLVTDLLHLAELLQ
EAATLNESEAALLRWFEKQIQGEDRQTEQQVRLESELQLVKIVTIHKSKGLEYDLVWLPF
IGYASKFRPEHISTYYDQDRDEVLWDIDGSHEKDVKQEDFAEQLRLLYVALTRAKYQLNI
GVPKTFEKKWSALLYVLTQGDIQTNDNPTAYDSLPLLEKLVQRAPRGSIQISETTALKAL
DELMQSETQAPLNAATFTGHIEQNWTVTSFSAIEAIHQNKKYYKEQLAAESAVAFEPVFD
GGKDYDFNEQATETMAESVSHESAYPFGYSPFDFPHGIKIGTALHRFLEKYDFSQPLNED
KVQKLCQWLQLEETWLPSLQQWMKAILDTPLSADDTTLKLNNLSRQQCVKEMQFYLKLNR
VFDVTAFNRALQKHHHLPSEALQFDAIKGMLRGFMDLVFCHNGKYYLVDYKSNFLGVEPQ
NYVGKSLEQAMLANHYDWQYLFYTLALHRYLQQRDANYQYETHFGGVFYCFLRGMNGENQ
DGVFFDKPDYALIQALENLF
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaactcaatccgatttctatcccgttaaatgctgttagtctaattgaagcctct
gccggtacgggcaaaacctataccatgggttccctttatttacgtttgttactgcaagca
ggagaaaatacctttccctatgcgttgaatgtcgagcaaattttggtggtgacctttact
gaaatggcgacagaggagctgaaacgcaaaattcgtgaacgtatttacgatgccaaacaa
aaattgacggcttatcagcagacacaggattcggcagtatttggacaggatgatttttta
cgcgaattggttgcgagcatcaccgacttaccgcttgccattcaacgcctgaccttggcg
gaacaaaatatggatttagcggcgatctataccattcatggtttctgtcgccgaatgctg
atgcaatacgccttcaattcaggcgttcatttcaatctagaattaagcggtgaagaagat
gagttgctattgcacttggcacaaaaaatttggcgtgagcatttttattcacagccttat
gctgttgtcgaatttattcaaaagaatttggtttcaccaagcaatattgtgacaaaaatc
aaaaaatttgccggaatcgaattaaaactcccggaaaaacgaccgcacttttttgagggg
actttcgaggaatttctttcaaaacttaccgattactcgcaagtattaatcgcgcaaact
caggaattaaagcaaaaatggctagaaaaagaggtggaaattacggagttgattgaaaca
gaaatcaacaccaaatataagaatacgaaagaacaaaaattaaaccgccgcagtttcaca
tctgccaatcgcccgaaatggcttgccgccatgaaacgttgggcgggaatcgaaaaagca
gatttcccggattgtttttaccgcttcggtcaaacggcaatggatgaacagaaaggcgag
gaagcacaggaagctttgagtcacccgcttttcatcaaaattgatgagttattagcattt
tccgaacaacaggctttactgtctcaagcgctctggtttcattatttagaaacgctgaat
gggcagctagcagaatacaaactcaaccatagcgaaaaaagtttttatgatttattgcgc
ttgttaaaagaagctttatgccatctgaataatactgaatttgctcagttgattcgttat
caatacccgtttgccatgattgatgaatttcaagatacggatgcggtgcaatatcagatt
ttttctaaggtttatgtagagccactacgattagaacctacgtctgataacggctttatt
atgattggcgacccaaaacaggcgatttataaattccgtggcgcagacatttttacttac
tttaaagcggctgatgaagcacagcaccgtttcaatctaggaaaaaattaccgctctcac
caagatgttgtgcaatgtgtcaatcacttgtttgattttcacgaaccgcctccgttttta
tataacaagattcaattcttgccggtcgaatctaaagacgatcatccgaaattttggtta
aacggtgaagtggaacctgccgtacggttttatgtggatgaagcctccgtaaaagagaat
atggcaaaagcttgtgctgtttctattcaacattggttgcaaagtgcggtggaaaataac
gctgattttcgttccgatgaaaaaggcatcgaaaaaacgctaaaaccggaaagtattgcg
gtattggtgcgtagtcgcaaagaagccgatttggtaaaaaatgcgttacgtcgtcttggc
attgcttccgtgtttttgtctgaaaatagcaatgtgtttgacagtaatgcaggaaaagat
ctgttgttgattttaacggcatgccttaatccattttccgaacgcaacattttaaatgct
gttgcaacggcgatttttgcgcaaacggcagccgatattcagcgcattcgtttagacgaa
aaccgttgggaatattgggtagaaaaatttattcattatcaaaaaacgtggcaaaaacaa
ggtgtattagtgatgttgcaccagctattcctacaagaaaaaattactgaaaaattgtat
cccacggtggatggtaaacgcctggtgacggatttgctacatttagcggagttattgcaa
gaagcggcaacgttgaacgaaagtgaagccgcattgttacgttggtttgaaaagcaaatt
caaggggaagatcggcaaacagaacaacaagttcggttagaaagtgagttgcagttggtc
aaaattgtcacgattcataaatccaaagggctggaatacgatttagtttggttgccgttt
attggttatgcctccaaatttaggcctgaacacatttccacttattacgaccaagatcgg
gatgaggtgctgtgggatattgatggttctcatgagaaggatgtaaaacaagaggatttt
gccgaacagcttcggttactctatgtggcgctgacccgagcgaaatatcagttgaacatc
ggtgtgccgaaaacctttgagaaaaagtggagtgccttgttatatgtgctcacacaagga
gacattcaaacgaatgacaatccgacagcctacgacagcttgccgctattagaaaagttg
gttcaacgcgccccaaggggaagtattcagatttctgaaaccacggcattaaaagcgcta
gatgaactaatgcagtcggagactcaagcgccattaaacgcggcaacattcaccggacat
attgaacaaaactggacggtgaccagttttagcgccattgaggcgattcatcaaaataaa
aaatattacaaagaacagctggcggcagaaagtgcggttgcttttgagcctgtttttgat
ggcggcaaagattatgattttaacgagcaagcgacagaaaccatggcggaaagcgtgagt
catgaatctgcctatcctttcggttattcgccttttgattttccgcatgggattaaaatc
ggtacagcgttgcaccgtttcttggaaaaatatgattttagtcagccgttaaatgaagac
aaagtgcaaaaactctgccaatggttacagttagaggaaacttggttgccatccttacaa
caatggatgaaggcgattttagatacgccgttaagtgcagatgatacaacgttgaagctg
aacaatttatctcgccagcaatgtgtgaaagaaatgcagttttatttgaaactcaatcgg
gtgtttgatgtgacggcatttaatcgggcgttgcaaaaacatcaccatttgccatcggaa
gcgctgcaatttgatgcgattaaaggcatgttacgcggttttatggatttggttttctgc
cacaatgggaaatattatttggtggattacaaatcgaattttctcggtgtcgaaccgcaa
aactatgttggcaaaagccttgagcaagccatgctggcaaaccattacgactggcaatat
ttgttttacacgctggcattgcaccgttatttgcaacaacgtgatgcaaactatcaatac
gaaacccattttggcggcgtgttttattgtttcttacgcggcatgaacggtgaaaatcag
gacggtgtgttttttgataaaccggattatgcgttaattcaagccttggagaatttgttc
tga
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