Aequorivita sublithincola: Aeqsu_3115
Help
Entry
Aeqsu_3115 CDS
T02132
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module,ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
asl
Aequorivita sublithincola
Pathway
asl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
asl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Aeqsu_3115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asl03400
]
Aeqsu_3115
Enzymes [BR:
asl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Aeqsu_3115
DNA repair and recombination proteins [BR:
asl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Aeqsu_3115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AFL82550
UniProt:
I3YZY2
LinkDB
All DBs
Position
complement(3385499..3387922)
Genome browser
AA seq
807 aa
AA seq
DB search
MSLDKYIEKRKFDQTPEPKGVVNKENARRFVIQRHKASKLHYDLRLEMDGVLKSWAVPKG
PSMNASDKRLAIMTEDHPVGYLNFHGTIPKGNYGAGVMTIWDEGNYNVLLSEIGNDPVQQ
LEKGDLKIEFFGKKIKGTFALVHTKRGDKGNQWLLIKKKDEYSTDLEYDSEIFIENNNVK
SSESYRALDIQSFVKPMLASPAKKIFKDPEWVFELKWDGYRVLSNLFQNNVELYSRNGIS
YNEKFASIAKELKNIPHDCILDGEIVIIDKEGKNDFQKLQNYDDTIENLNLKYYVFDLLH
LNGMDTIALTLLERKSLLPELLNDLKNVFYCDHIQGMGPTLYNRALDAGMEGVIAKKADS
KYSPGYRSENWLKIKNSTTEEALICGYTDSVGGDTLFGSLILGQYNEEDLKYIGNCGSGF
SVTEQKELLAKFQKITIDESPFKEKINLKGRKPHWVKPFLVCEVKFSEKTKNGILRHPVY
KGIRQDKNVEEIVPQPIKEKKSFASNPSTLLDVNGISVPISNLEKVYWPEMGYTKYDLID
YYLNISDFILPYLKDRPQNLHRHPNGINGESFYQKDNDQLPNWVETTKIHSESSQKNIEY
LICQNQATLLYMANLGCIEINPWNSKINNLENPSYTVIDLDPSAENSFAEVIEVAQVAKE
VLDLFKIEGYCKTSGSSGIHIYLPLDELYSYQEARDFTKLLCYYIQERLPKLTSMERAVK
NRKGKIYLDYLQNRRGQTLASVYCVRPKVGATVSTPISWNELKKGLQLEDFTIKTVPKRL
EKIGDIFQGVLGQGINIENALGTISEK
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
ttgagtttagataaatacatagaaaaaagaaagtttgatcagacgcctgaacccaaagga
gttgtaaataaggaaaatgcgagacgttttgttattcaacgtcataaagcttcaaaatta
cattacgatttaagattagaaatggatggagttttaaagagttgggctgttccaaaggga
ccttcaatgaatgcttctgacaaacgcttggccattatgaccgaggatcatcctgtaggt
tatttaaattttcatggcaccattcccaaaggaaattacggagcgggagtaatgacaatt
tgggacgagggaaattataatgtgttattaagtgaaataggaaatgacccagttcaacaa
ttagaaaaaggggatctgaaaatagaattctttggaaagaaaataaaaggaacatttgct
ctcgttcatactaaaagaggcgataaaggcaatcagtggctattgataaagaagaaggat
gaatattcaaccgatttagaatacgattctgaaatatttattgaaaacaataatgtaaaa
agttcagaaagttatagagctttagacattcagagctttgtaaagcctatgcttgccagt
cctgcaaagaaaattttcaaggatcctgaatgggtttttgaattaaagtgggatggatat
cgtgtactctcaaatctatttcaaaataatgtggaactatattcacgtaatggaatttca
tataatgagaaatttgcaagtattgcgaaggagttgaaaaatattccacacgattgcata
ttagatggagagatagttattatagacaaggaaggaaaaaacgattttcaaaaacttcag
aattatgatgataccattgaaaatttaaatttgaaatattatgttttcgacttacttcat
ctcaacggaatggatacaattgccttaaccctattagaacgtaaaagtctgttgcctgaa
ttattaaacgacctaaaaaacgtcttttactgcgatcatatccaaggaatggggccaaca
ttatataatcgtgcattggatgcaggaatggaaggggtaatagcgaagaaagcagattcc
aaatattctcccggatatagaagtgaaaattggttgaaaattaaaaatagcaccacggaa
gaagccttaatttgtggctacactgattctgtaggtggtgatacattattcggatcgctt
attttggggcaatataacgaagaagatttaaaatatatagggaattgtggttctggattt
tcagttacagaacaaaaggagttgttggcaaaatttcaaaaaattacaattgatgaaagt
ccatttaaagaaaaaataaatttaaaaggtagaaaaccacattgggtgaaaccattttta
gtttgtgaggtaaagttttcggagaaaactaaaaatggaattttgagacatcctgtctat
aaaggtataagacaagataaaaatgttgaagaaattgtccctcaacctattaaggaaaaa
aaatccttcgcttcaaatccttccacacttttagatgtaaatggaatatcggtaccaatt
tctaatttagagaaagtgtattggccagaaatgggttatacaaaatatgacttgatagat
tactacttaaatatttccgacttcatattaccgtatttgaaggatcgtcctcaaaattta
caccgccatcccaacggaattaatggagaatctttctatcaaaaggataacgatcagcta
ccaaactgggttgagacaactaaaattcattccgaatcttcccaaaaaaatattgaatat
ttaatttgtcaaaatcaagcaaccttactctatatggctaacttgggatgcatagaaata
aatccttggaattctaaaattaataatctcgaaaatccgagttatacggtaatcgatttg
gacccttcagctgaaaattcatttgctgaggtaattgaggtagcccaagttgctaaagaa
gttctggacttatttaaaattgaaggctattgcaaaacctctggctcctctggaattcat
atttatttgcctttggatgaactctatagttatcaggaagcaagagattttacaaaactg
ctttgctattacattcaagagcgtttgccaaaactaacaagtatggagagagctgtaaaa
aatagaaaaggaaaaatatatctagattacctgcaaaataggcgagggcagacattagct
tcagtatattgcgtgcgtcctaaagttggtgcaacagtttcaacgccgatatcttggaat
gaactgaaaaaaggtttacaattagaagattttactattaaaaccgttccaaagcgtctg
gaaaaaataggtgacatatttcaaggagtattagggcagggtatcaatatagaaaatgct
ttaggtacaatttctgaaaaataa
DBGET
integrated database retrieval system