Actinomyces slackii: NCTC11923_01030
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Entry
NCTC11923_01030 CDS
T06783
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
asla
Actinomyces slackii
Pathway
asla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC11923_01030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asla03021
]
NCTC11923_01030 (rpoC)
03400 DNA repair and recombination proteins [BR:
asla03400
]
NCTC11923_01030 (rpoC)
Enzymes [BR:
asla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC11923_01030 (rpoC)
Transcription machinery [BR:
asla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC11923_01030 (rpoC)
DNA repair and recombination proteins [BR:
asla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC11923_01030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
VEG74396
UniProt:
A0A3S5EM58
LinkDB
All DBs
Position
1:1260539..1264495
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDANVFDRIQLGLATAEDIKSWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
ACGKYKRVRYKGIVCERCGVEVTRSKVRRERMAHIKLAAPVTHIWYFKGVPSRLGYLLNL
APKDLEKVIYFAAYMVTEVDEEARHDDLPSLRNELEVKRKHVEESGLADVEARQQRLESD
LAQLETEGADAAQREKLRKTAEREMTALRRKTQRTVEHMDKVWDRFVSLKVGDLEGDEVL
YRDMAADYGIYFKGAMGAEAIQARLRNFDLESEAAALAEIVETGTGQRKTRAIKRLKVVN
AFRMTGTAPESMVLDNIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPTIIVNNEKRMLQDAVDALFDNGRRGRPVTGVGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLALHQCGLPSQMALELFKPFVMKRLVELKEAQNVKAAKRMVERAN
PKVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLGAEAAAEARILMLSSNNILKPSDGRPVTMPSQDMIIGTYYLTSDPDPAVEVEL
DAAGNPVVPSFSSFAEAVMAHDFGKLHVNAACDIRFEEGIVAPEGWQAPLDHEEGEPITL
RTSLGRALFNTALPESFPYVNYVVDKKALGNIVNALAENYPRVDVAASLDALKAAGFYWS
TWSGITVAFADVVSPEAKAEILARYEDEAAEIEDQFDLGALTEEDRYASLIDIWTKATAE
VADAMRENFPHRNTVYQMVVSGARGNWDQIRQLAGMRGLVADPKQRLIERPIKSNYREGL
SVLEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCGTRKGLTKRIFSW
VEVDGERFKEPSEILSTTVYGTTLARNLVDESGVVVVEAGTDLGEAEVMAAIDAGIEEIS
VRSVLTCDSVVGTCAACYGRSLATGKRVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAA
GAADITQGLPRVQELFEARTPKGEAAVAEAAGTLKIEDDADGKRLVITRDDGEEDVVVPV
SRRQRLLIADSDHVEPGQALTEGPVDPKKVLRLRSVAATQRHLVEEVQEVYRSQGVDIHS
KHIEVIVRQMLRRVTVLDSGDTRLLQGDLVDVMHYREENRRVMAEGGKTATGRTELMGIT
KASLATDSWLSAASFQETTRVLTEAAMNGKSDPLLGLKENVILGKLIPAGTGLARYADIE
VEPTEEVKAEVFSRTGFNESSFGESVALDDFHFGGDLRADFSEDFRPGFTAASEDFEF
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgccaacgtgttcgacaggatccagctcggcctggccaccgcggaggacatc
aagtcctggtcgcacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggccccacccgtgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgctacaagggcatcgtctgcgagcgctgcggcgtg
gaggtcacccgctccaaggtgcgccgtgagcgcatggcccacatcaagctggccgcgccg
gtgacccacatctggtacttcaagggcgtgccctcgcgcctgggctacctgctcaacctg
gcccccaaggacctggagaaggtcatctacttcgcggcctacatggtcaccgaggtcgat
gaggaggcccgtcacgacgaccttccctccctgcgcaacgagctggaggtcaagcgcaag
cacgtcgaggagtcggggctggccgacgtcgaggcgcgccagcagcgcctggagtccgac
ctggcccagctcgagaccgagggcgctgacgccgcccagcgcgagaagctgcgcaagacc
gccgagcgggagatgacggcgctgcgccgcaagacccagcgcaccgtggagcacatggac
aaggtctgggaccggttcgtctccctcaaggtcggcgacctggagggcgatgaggtgctc
taccgggacatggccgccgactacggcatctacttcaagggcgccatgggcgccgaggcc
atccaggcccgcctgcgcaacttcgacctggagagcgaggcggccgccctggccgagatc
gtcgagaccggcaccggccagcgcaagacccgcgccatcaagcgcctcaaggtggtcaac
gccttccgcatgaccggcaccgccccggagtcgatggtcctggacaacatcccggtcatc
cccccggacctgcgccccatggtccagctcgacggcgggcgcttcgccacctccgacctc
aacgacctctaccgccgggtcatcaaccgcaacaaccgcctcaagcggctcatcgacctg
ggcgccccgacgatcatcgtcaacaacgagaagcgcatgcttcaggacgccgtggacgcc
ctgttcgacaacggacggcgcggccgcccggtcaccggcgtgggcaaccgccccctgaag
tccctgtccgacatgctcaagggcaagcaggggcgcttccgccagaacctgctgggcaag
cgcgtggactactcgggccgctcggtcatcgtggtgggcccccagctggccctccaccag
tgcggcctgcccagccagatggcactggagctgttcaagcccttcgtcatgaagcggctg
gtcgagctcaaggaggcccagaacgtcaaggccgccaagcggatggtcgagcgcgccaac
cccaaggtgtgggacgtcctggccgaggtcatccgcgagcaccccgtgctgctcaaccgc
gcccccaccctgcaccgcctgggcatccaggccttcgagccccagctcatcgagggcaag
gccatccagctccacccgctggtgtgcggcgccttcaacgccgacttcgacggcgaccag
atggcggtccacctgcccctgggcgccgaggccgccgccgaggcccgcatcctcatgctg
tcctcgaacaacatcctcaagccctccgacgggcgcccggtgaccatgcccagtcaggac
atgatcatcggcacctactacctgacctccgaccccgacccggcggtcgaggtcgagctc
gacgccgccggcaacccggtggtcccgtccttctcctccttcgccgaggccgtcatggcc
cacgacttcggcaagctgcacgtcaacgcggcctgcgacatccgcttcgaggaggggatc
gtggcgcccgagggctggcaggcccccctcgaccatgaggagggcgagccgatcacgctg
cgcacctccctggggcgcgccctgttcaacacggccctgcccgagtccttcccctacgtc
aactacgtggtggacaagaaggccctgggcaacatcgtcaacgccctggcggagaactac
ccgcgcgtggacgtggccgcatccctggacgccctcaaggcggccggcttctactggtcg
acctggtcgggcatcaccgtggccttcgccgacgtcgtctccccggaggccaaggccgag
atcctggcccgctacgaggatgaggccgccgagatcgaggaccagttcgacctgggcgcc
ctgaccgaggaggaccgctacgcctccctcatcgacatctggaccaaggccaccgccgag
gtcgccgacgccatgcgcgagaacttcccgcaccgcaacaccgtctaccagatggtggtc
tccggggcgcgaggcaactgggaccagatccgccagctggccggcatgcgcggcctggtg
gccgaccccaagcagcggctcatcgagcgccccatcaagtccaactaccgcgagggcctg
agcgtcctggagtacttcatcgccacccacggcgcccgcaagggcctggcggacacggcg
ctgcgcaccgccgactccggctacctcacgcgccgcctggtcgacgtctcccaggacgtc
atcgtccgcgaggacgactgcgggacccgcaagggcctgaccaagcggatcttctcctgg
gtggaggtcgacggcgagcgcttcaaggagcccagcgagatcctgagcaccacggtctac
ggcaccaccctggcccgcaacctggtggacgagtcgggcgtggtcgtcgtcgaggccggc
acggacctgggcgaggccgaggtcatggccgccatcgatgcgggcatcgaggagatctcg
gtccgctcggtgctgacctgcgactcggtggtgggcacctgcgcggcctgctacggccgc
tccctggccaccggcaagcgggtggacatcggcgaggccgtgggcatcatcgccgcccag
tccatcggtgagcccggcacgcagctgaccatgcgcaccttccacaccggtggtgccgcg
ggcgccgccgacatcacccagggtcttccccgcgtccaggagctcttcgaggcccgcacc
cccaagggcgaggccgccgtggccgaggccgccggaaccctgaagatcgaggacgacgcc
gacggcaagcgcctggtcatcacgcgcgacgacggcgaggaggacgtggtggtgcccgtc
tcgcgccgccagcgcctgctgatcgccgactccgaccacgtcgagcccggccaggccctc
accgagggcccggtggaccccaagaaggtgctgcgcctgcgctcggtggccgccacccag
cgccacctggtcgaggaggttcaggaggtctaccgctcccagggcgtggacatccactcc
aagcacatcgaggtcatcgtgcgccagatgctgcgccgcgtcacggtgctggactccggg
gacacccgcctgctgcagggcgacctggtcgatgtcatgcactaccgcgaggagaaccgc
cgcgtcatggccgagggcggcaagaccgccacgggccgcaccgagctcatgggcatcacc
aaggcctccctggccaccgactcctggctctcggcggcctccttccaggagaccacccgc
gtgctcaccgaggccgccatgaacggcaagtccgatcctctgctgggcctcaaggagaac
gtcatcctgggcaagctcatccccgccggcacgggcctggcccgctacgccgatatcgag
gtcgagcccaccgaggaggtcaaggccgaggtcttctcccgcaccggcttcaacgagtcc
tccttcggggagtccgtggccctggacgacttccacttcgggggcgacctgcgggccgac
ttctccgaggacttccgccccggcttcaccgccgcgagtgaggacttcgagttctga
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