Alligator sinensis (Chinese alligator): 102388312
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Entry
102388312 CDS
T02922
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
asn
Alligator sinensis (Chinese alligator)
Pathway
asn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102388312 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asn03400
]
102388312 (LIG4)
Enzymes [BR:
asn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102388312 (LIG4)
DNA repair and recombination proteins [BR:
asn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102388312 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Ribosomal_S5_C
ATG17_like
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
102388312
NCBI-ProteinID:
XP_006037973
UniProt:
A0A1U7SWK4
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MMSSTPAAQSSSKQTVASQVPFADLCSTLERMQKCKSRPEKTKYFKDFLDSWRKFHGALH
KKEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRT
PAGSRGDAGDFAMTAYFVLKPRCPEQGKLTIEQVNELLDSIASNNAAKRKDLVKKSLLQL
ITQSSALEQKWLIRMIIKDLKLGASQQTIFSIFHPDASELHNVTTDLEKVCRQLHDPSVS
LTDVSIALFSAFKPMLAAIANIQQIEKQMNNQCFYIETKLDGERMQMHKDGDVYKYFSRN
GYDYTQQFGPSPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRM
VEESDLQTCFCVFDVLMVNDQKLGHEILSKRYEILNEVFTPVTGRMHVVHKTRGSTRKEV
VDALNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKG
LRGGMMSHFLCAVAETPTPGGKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYRKREP
PCNILCGTEKPEVYIEPCNSVIVQIKAAEIVTSEMYKTDCTLRFPRIEKIREDKEWHECM
TLSMLEQLRGRASGKLASKHLDVANDEPQEKKRKTVPKTKKIIGIAEQFKAPDLSNVSKV
SNVFDDVEFCVLTGTENHSKSDLESKIAECGGNVVQNPGPDTYCIIAGIENVRVKNVISS
NKHDVVRAVWLLQCFQTKMFVPWQPAFMIHMTPDTKLHFAREFDCYGDSYSADIDVAQLK
EVFSRVNNTIDAKMPLEVIGELEERYSWDSHPLSMFRRNTIYLDLYAVVNDPKTKICGTR
LTVRALDLRFYGAKVVSQLKEGVSHVVMGEDRARVKEIKMLRRTFEKKFKILSELWVTDS
IREGKLQSENQYLI
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcatccacacctgctgcacagtcatcctctaagcaaactgtagcatcacaagtg
ccttttgcagatctctgttcaactttagaacggatgcagaaatgcaaatcccgcccagag
aaaaccaagtatttcaaggattttttagattcatggaggaagtttcatggtgccctccat
aaaaaggagaaggatgtcacggactctttttatcccgcaatgcgacttattcttccacaa
ctggaaagagaaagaatggcttatggaataaaagaaaccatgcttgctaagctgtatatt
gaactacttaatttacccaaagaaggaaaagatgccctaaagcttttaaattatagaaca
ccagctggttcacgtggagatgctggggactttgcaatgactgcctactttgtattgaaa
cccaggtgcccagagcaaggcaaattgactattgaacaagtgaatgaacttctagattca
attgccagtaataatgctgctaaaagaaaggacctggtaaagaaaagtctccttcaatta
ataactcagagctcagcacttgaacaaaagtggttgatccggatgattataaaggatcta
aaacttggtgcgagtcagcaaactatattttccatttttcatcctgatgcttccgaatta
cacaatgtcacaaccgatctggagaaagtttgcagacagctgcatgacccttctgtatct
ctcactgacgtttccattgctttgttttctgcctttaaaccaatgcttgcagctattgct
aatatccagcaaattgagaagcaaatgaacaaccagtgtttctacatagaaactaagcta
gatggtgagcgtatgcagatgcacaaagatggagatgtatacaaatatttttccagaaat
ggatatgattatacccagcagtttggcccatctcccctagaaggttcgttaactccattt
attcataatgtgtttaaaagtaacatacaaaactgcattcttgatggtgaaatgatggct
tataatcccaacacacaaactttcatgcagaagggaaacaaatttgacataaaaagaatg
gtggaggaatctgatctgcaaacttgcttctgtgtgtttgatgtgttaatggttaatgac
cagaagttgggtcatgagatactaagcaaaaggtatgagattctgaatgaggtatttacc
ccagtcacaggcagaatgcatgttgtgcacaaaacacgcggtagtacccggaaagaagtg
gtcgatgctctgaatgaagcaatagacaatagggaagaaggaatcatggtaaaagatcct
atgtccatctacaagccagacaaacgaggagagggctggctgaaaatcaaaccagagtat
gtcactggcttgatggatgaattagatcttttaattgttggtggctactggggaaaaggg
ttgcgtggtggcatgatgtctcattttctgtgtgctgttgcagagacacccactcctggt
ggaaagccatctgtttttcactctatttgtcgtgttggttctggctatactatgaaggaa
ctttatgatcttggtctgaagctggctaagcactggaagccttaccgtaaaagagagccc
ccttgtaacattttatgtgggactgagaaacctgaagtctacattgaaccttgtaactca
gtcatagttcagattaaagcagcagaaattgttactagtgagatgtacaaaaccgactgc
actttacgatttcctcgaattgagaaaataagagaggacaaggagtggcatgaatgcatg
actttgagtatgttagagcagctcagaggcagagcgtcagggaagctagcatcaaagcat
ctcgatgtagctaatgatgaaccacaagaaaagaaacggaaaactgtgccaaagactaag
aaaataattggtattgctgagcagtttaaagcccctgatctttctaatgtaagcaaggtg
tcaaatgtttttgacgatgttgagttttgtgttcttactggaacagaaaaccattcaaaa
tccgaccttgaaagcaaaattgcagaatgtggtggcaatgtagtacagaaccctggaccg
gacacttattgcatcattgcaggaattgagaacgtaagagtgaagaacgttatctcttcc
aataagcatgatgttgtgagagcagtgtggcttttacagtgttttcaaaccaaaatgttt
gtaccatggcagcctgcttttatgattcacatgactccagacacaaaactacattttgcc
cgtgaatttgactgttatggtgacagctactcggcagatatagatgtggctcaactaaag
gaagtgttctcaagagtcaataatactattgatgcaaagatgcctctggaagtaattggt
gaattggaagaacggtactcatgggacagtcatccactcagtatgtttaggcgaaacacc
atatacctggatctttatgctgttgttaatgatcccaagaccaagatctgtggaacaagg
ctaacagttagagctttggacctccgtttttatggagcaaaagttgtctcacagctaaag
gaaggagtgtcccatgtagttatgggagaagatcgtgcccgtgtgaaagaaataaaaatg
cttagaagaacatttgaaaaaaaatttaaaattctatctgaactgtgggtaacagattcc
ataagggaaggaaagctgcagagtgaaaatcaatacttaatttag
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integrated database retrieval system
