Candidatus Arthromitus sp. SFB-mouse-NL: SFBmNL_00575
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Entry
SFBmNL_00575 CDS
T03243
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aso
Candidatus Arthromitus sp. SFB-mouse-NL
Pathway
aso02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aso00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SFBmNL_00575 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aso03021
]
SFBmNL_00575 (rpoD)
Transcription machinery [BR:
aso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SFBmNL_00575 (rpoD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
AID44483
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Position
583168..584241
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AA seq
357 aa
AA seq
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MKDNSYVMSVLKGLLTKGKESGGLLSKDIMDELEDVDLTPEHVEKLYMALDKMGIEVVDN
FSNEFVEDLDLNSVIPEGITMDDPVRMYLKEIGSVQLLTSEEEILLSKKIKQNDTTSRIA
RKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYATWWI
RQSITRAIADQARTIRIPVHMVETINKYTRVSRQLLQELGRDPLSEEIAKEMNMPENKVR
DIRKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEVAAFTLLKEQLMNVLDTLSARE
KNVLKLRFGLDDGRARTLEEVGKEFKVTRERIRQIEAKALRKLRHPSRSKKLKDYLE
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggataatagttatgttatgtctgtcttaaagggtttgttaactaaagggaaagag
tcaggcggattattatccaaagacataatggatgaattagaggatgtagatttaacccca
gaacatgttgaaaagctgtatatggctttagataaaatgggaatagaagtggtagataat
ttttctaatgaatttgttgaggatttggatttaaattctgtaatacctgaaggtattaca
atggatgatcctgttagaatgtatttgaaagaaataggaagtgttcaacttcttacatca
gaagaagaaattttgttgtctaagaagataaagcagaatgacacgacttctagaatagct
agaaagaaattggcagaggcaaatttaagattagttgttagtattgctaagagatatgta
ggtaggggaatgctttttttagatctaatacaggagggtaatttagggttaataaaagct
gtggaaaagtttgatcatacgaagggatttaaatttagtacttatgctacatggtggatt
agacaatctataactagagcaattgcagatcaggctagaactattaggattcctgttcat
atggtagaaactattaataaatatacaagagtatctaggcagttattacaagaattagga
agagatccgctgtctgaagaaatagcaaaagaaatgaatatgcctgaaaataaggtaagg
gatattcgtaagattgctcaagagccagtatcattagaaactcccattggtgaagaagag
gatagtcatttaggagattttattcctgatgatgatgcaccagcacctgctgaagtagct
gcatttactttattgaaggaacaattaatgaatgttttagatactttaagtgctagagag
aagaatgtattaaaacttaggttcggattagatgatgggagggctagaaccttagaagaa
gtaggtaaggagtttaaagttactagggaaagaattagacaaatagaagccaaggcttta
agaaaattgcgtcatccaagcaggagtaaaaagttaaaagattatctggagtag
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