Arabidopsis thaliana (thale cress): AT1G28420
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Entry
AT1G28420 CDS
T00041
Symbol
HB-1
Name
(RefSeq) homeobox-1
Organism
ath
Arabidopsis thaliana (thale cress)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WSD
DDT
HARE-HTH
Homeodomain
WHIM1
Homeobox_KN
zinc_ribbon_15
zinc-ribbons_6
Motif
Other DBs
NCBI-GeneID:
839740
NCBI-ProteinID:
NP_174164
TAIR:
AT1G28420
UniProt:
F4HY56
LinkDB
All DBs
Position
1:9979478..9987737
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AA seq
1705 aa
AA seq
DB search
MEMGSDGEDQKIRSVVGDANLNNKKKKIDNNSSSKDGRVKPKRQMKTPFQLETLEKVYSE
EKYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKKDGQSNKPVKSSVAAVQSASVNELP
AAAGSVPEQDSRSDSGSESGCSPYSNSRRNFASGSSSSRAELDEYETMGKPSYESRLSTM
VHRAIVCIEAQLGEPLRDDGPILGMEFDPLPPGAFGTPIAMQKHLLHPYESDLYERHDPR
PRRSHAAARSFHEQQSLDDPSSFTPNMYERYSENHARGMDYEVARSRISSFMHANGPVPR
SYVTPGHASRNCSTSQQDMPSPIESAHHGDRFLLEKDSSVLGTEDPYLLPDGVRKSSDVH
RKGKINDGRLGRGSETRENHGPKDLEKLEIQRKKNEERMRKEMERNERERRKEEERLMRE
RIKEEERLQREQRREVERREKFLQRENERAEKKKQKDEIRREKDAIRRKLAIEKATARRI
AKESMDLIEDEQLELMELAAISKGLPSVLQLDHDTLQNLEVYRDSLSTFPPKSLQLKMPF
AISPWKDSDETVGNLLMVWRFLISFSDVLDLWPFTLDEFIQAFHDYDSRLLGEIHVTLLR
SIIRDVEDVARTPFSGIGNNQYTTANPEGGHPQIVEGAYAWGFDIRSWKKHLNPLTWPEI
LRQLALSAGFGPKLKKKHSRLTNTGDKDEAKGCEDVISTIRNGTAAESAFASMREKGLLA
PRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVAL
TRDVKLFERIAPSTYCVRAPYVKDPKDGEAILADARKKIRAFENGFTGPEDVNDLERDED
FEIDIDEDPEVDDLATLASASKSAVLGEANVLSGKGVDTMFCDVKADVKSELEKEFSSPP
PSTMKSIVPQHSERHKNTVVGGVDAVIDESNQGQSWIQGLTEGDYCHLSVEERLNALVAL
VGIANEGNSIRTGLEDRMEAANALKKQMWAEAQLDNSCMRDVLKLDLQNLASSKTESTIG
LPIIQSSTRERDSFDRDPSQLLDETKPLEDLSNDLHKSSAERALINQDANISQENYASKR
SRSQLKSYIGHKAEEVYPYRSLPLGQDRRHNRYWHFAVSVSKSDPCSRLLFVELHDGKWL
LIDSEEAFDILVASLDMRGIRESHLRIMLQKIEGSFKENACKDIKLARNPFLTEKSVVNH
SPTDSVSPSSSAISGSNSDSMETSTSIRVDLGRNDTENKNLSKRFHDFQRWMWTETYSSL
PSCARKYGKKRSELLATCDACVASYLSEYTFCSSCHQRLDVVDSSEILDSGLAVSPLPFG
VRLLKPLLVFLEASVPDEALESFWTEDQRKKWGFRLNTSSSPGELLQVLTSLESAIKKES
LSSNFMSAKELLGAANAEADDQGSVDVLPWIPKTVSAVALRLSELDASIIYVKPEKPEVI
PEDENEQISLFPRDSPFKGKGPREQEDQDEVAPNPGNRNKKRARVSLGSGSNRKVKRKKA
QSGLNKFVVGRRNVAVNSNLMAVELNHQVPGKGKRTVRKRPERIDEDNSHLVNRMANIVR
PKSEEVEEDEEEEEQTFRDINEDWAAGETPREMEEDWANETPNRMMTPMQVDDESDNSVG
VESEDEDGGGQFVDYSQRNKWGLDWNSNLNVAIEEDEEEEVVGVGRVEGEDDAEMSESSE
DDDVPANNAANNYDRESEGYSSSDS
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atggagatgggttctgacggtgaagatcagaagatcaggagcgtcgttggtgatgctaat
cttaataataagaagaagaagattgataataattcctcctctaaggatggtcgtgtcaag
cctaaacgtcagatgaaaactccgtttcagcttgaaaccttggagaaagtttattcagag
gagaagtatccgtcggaggcgacgagggctgagttatctgagaaattggatttgtcagat
cgacaattacagatgtggttttgtcatagacggttaaaggacaagaaggatggtcagtct
aataaaccggtgaaatcatcggttgctgcggttcaatcggcttcggttaacgagttaccg
gctgctgctggatcggtacctgagcaagattccagatctgattcgggttctgagtctggt
tgcagtccttattccaactctaggaggaattttgctagtggtagtagtagttctcgagct
gaattggatgaatatgagacaatgggaaagccgagttatgagtcgcggttgtcgacaatg
gtgcatagagctattgtctgtattgaggctcagttaggtgagccattgagagatgatgga
cctattcttggcatggagtttgatcctttgcctcctggtgcgtttggaacacctatagcg
atgcagaaacacctacttcatccctatgagagcgatctgtatgagcgacatgatccccga
cctcgaagatctcatgctgctgcccgttctttccatgagcaacaatctctggatgatccg
tcttcttttacacctaatatgtatgaacgatactctgaaaatcatgcacgtggtatggac
tatgaagttgcacgttctagaatttcatcatttatgcacgcgaatggacctgtaccaagg
tcctatgttacccctggacatgcgtctcgtaactgttcgacatctcaacaagacatgcca
agccccattgaatcagcgcatcatggtgatagattcctgctggagaaggactcatcagtc
cttggtacagaagatccatatttgttacctgatggagtgcgtaagagtagtgatgtgcat
agaaagggaaagattaacgatggtagacttggaagagggagtgaaacccgagagaatcat
ggaccaaaagatcttgagaagctagaaattcagaggaaaaagaatgaagaacgcatgaga
aaagagatggaaaggaacgagcgtgagaggcgtaaggaagaagagaggttgatgcgtgaa
agaataaaagaagaggaaaggttacagcgtgagcagcgtcgtgaagtagaaagaagagaa
aaattcttacagagagaaaatgaaagggctgagaaaaagaagcaaaaagacgagattcgt
cgagagaaagacgctattagacgcaagcttgccattgagaaggcaactgcacgtagaatt
gccaaggagtctatggatcttattgaagatgagcagctagaactaatggaattggctgct
attagcaaaggattaccctcagtattacagcttgatcacgacacattgcagaatcttgag
gtgtatagagattctctgagcacatttccaccaaagtctttgcaactaaaaatgccgttt
gccatttctccatggaaagattctgatgaaactgttggaaaccttctaatggtttggaga
ttcctgatatcattttctgatgttcttgacctatggccttttacactggatgagtttatt
caggcttttcatgactatgactcaaggttgctgggggagatacatgttactcttctgaga
tcaataatacgagatgtcgaagatgttgctagaacaccctttagtggaattggaaataac
caatatactacagccaatcctgagggtggacatccgcaaatagttgaaggggcttatgca
tggggttttgacattcgtagttggaaaaagcatttgaacccactaacatggcctgaaata
ctgcgacaattagcgctctctgctggatttggacctaagctgaagaaaaaacattcccga
ttgaccaatactggtgataaggatgaggctaaaggttgtgaagatgtcatttctactatc
cgaaatggtacagcagctgaaagtgcttttgcatcgatgcgggagaaagggttgctcgct
cctcgcaagtcgaggcaccggttgacacctggaaccgtcaaatttgcagcctttcatgtt
ctatctcttgaaggaagcaagggactgacagtattagaacttgctgacaagattcagaaa
tctggacttcgggacttgaccacaagcaagacaccagaggcttctatttctgttgcattg
acaagagatgtgaaactctttgaaagaatagctccttcgacttattgtgtacgagctcct
tatgtgaaggatcctaaggatggagaggcaatactcgcagatgccaggaagaagatacgg
gcttttgaaaatggatttacaggtccagaagatgtgaatgatcttgaaagggatgaagac
ttcgaaattgatattgatgaggatcccgaggttgatgatttagctacactggcaagtgca
tcaaaaagtgccgttcttggagaagcgaatgttttgtcaggaaagggggtagatacaatg
ttctgtgatgttaaagcagatgtaaagagtgagcttgagaaggagttttcatctcctcct
ccaagcactatgaagagcattgttccacaacatagtgagcggcataaaaatacagtggtt
ggcggcgtggatgccgtaattgatgaaagcaaccagggccaatcatggattcaaggtctt
acggaaggggattactgtcatctaagtgttgaagagcgccttaatgcccttgttgcttta
gtcggcattgccaatgaaggaaactccatcagaacaggtcttgaggatcgtatggaagca
gcaaatgctcttaaaaagcaaatgtgggctgaagcacagttagataacagctgtatgaga
gatgtacttaagcttgatcttcaaaacttagcaagcagcaaaactgaatcaacgataggc
ctaccaatcattcaaagctctactcgtgagagggatagttttgatagagacccttctcaa
cttctagatgaaacaaagcccctggaagatctttcgaacgatcttcataaatcatctgct
gagagagcacttattaatcaggatgccaatataagtcaagaaaattatgcttcaaagaga
tcacgctcccaattaaagtcatatataggccacaaagcagaagaggtgtatccataccga
tctttgccgcttggacaagatcggcgccacaatcgttactggcattttgctgtatcagtg
tctaagagtgatccttgttcgaggctcttatttgttgagctacatgatggcaagtggctc
ctcattgattcagaagaggcttttgatattctggttgcatcattggatatgcgtgggatc
agagagtctcatttacgcataatgctgcagaagatcgagggatcattcaaagagaatgct
tgtaaagatataaagctagctagaaaccctttcttgacggaaaagagtgttgtgaatcat
tctcctacagattctgtgagcccatcgtccagtgctatatcagggtcaaactctgattca
atggaaacttcaacttcaattagagttgatttaggtagaaatgacaccgagaacaagaat
ttatcaaaacggttccatgatttccagagatggatgtggaccgagacgtacagttcacta
ccttcttgtgctagaaaatatgggaagaagagatctgaactgttagcaacatgtgacgcg
tgtgttgcttcctatttgtctgagtataccttctgctcttcttgtcaccagagattggac
gtggttgatagttcagagatattagattcaggtttggctgtgtctcctcttccttttgga
gtcaggttgctcaaaccactacttgtttttctcgaggcatctgttccagatgaagctctt
gaatcattttggacagaggaccaaagaaaaaaatgggggtttaggttgaatacttcatca
tcacctggagaacttttgcaggtgttgacttccttagagagtgcaatcaagaaagaatct
ttgtcatccaattttatgtcggcaaaggagcttttgggagctgctaacgctgaggctgat
gatcagggatcagtggacgttcttccatggataccaaagacagtatcagcggttgctttg
agactttcagaacttgatgcatccattatttatgtgaagccagagaaacctgaggtcatc
cctgaagatgagaacgagcagattagccttttccctagagattcacctttcaaaggcaaa
ggacccagagagcaagaagatcaagacgaggttgctccaaacccgggtaacagaaataag
aaacgtgcacgagtaagcttgggatctggatcaaacagaaaggtgaagaggaagaaagcg
caaagcggtcttaacaaatttgtcgttggtaggagaaatgttgcagtcaatagtaactta
atggccgttgagttgaaccaccaagtccctggaaaaggaaagaggacggttagaaaaaga
ccagagaggatcgatgaggataattcccacctagtcaatagaatggctaatattgttagg
cctaaaagcgaagaagttgaagaagatgaggaagaagaagagcaaacattcagagacatt
aatgaagactgggcagcaggtgaaactcctagagagatggaggaggactgggccaatgaa
acaccaaacagaatgatgacgccgatgcaagtggatgatgaaagtgacaacagtgtagga
gttgaatcagaggatgaagatggtggtggtcagtttgtggattatagtcagagaaacaag
tgggggttagattggaatagtaacctaaatgtggcaatagaggaagacgaggaagaagaa
gttgtgggggttgggcgggtcgaaggagaagatgacgcagaaatgagtgagagctctgaa
gatgatgatgtacctgctaataatgcagcaaacaattacgacagagaatcagaaggttac
agcagcagcgattcatga
DBGET
integrated database retrieval system