Arabidopsis thaliana (thale cress): AT2G23350
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Entry
AT2G23350 CDS
T00041
Symbol
PAB4
Name
(RefSeq) poly(A) binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT2G23350 (PAB4)
09123 Folding, sorting and degradation
03018 RNA degradation
AT2G23350 (PAB4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT2G23350 (PAB4)
03041 Spliceosome [BR:
ath03041
]
AT2G23350 (PAB4)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AT2G23350 (PAB4)
mRNA cycle factors
Stress granule specific factors
AT2G23350 (PAB4)
Spliceosome [BR:
ath03041
]
Complex C
Other components
Complex C specific factors
AT2G23350 (PAB4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
RRM_5
RRM_3
Nup35_RRM
BRAP2
Motif
Other DBs
NCBI-GeneID:
816867
NCBI-ProteinID:
NP_179916
TAIR:
AT2G23350
UniProt:
O22173
A0A178VSF7
LinkDB
All DBs
Position
2:9942915..9946347
Genome browser
AA seq
662 aa
AA seq
DB search
MAQVQAPSSHSPPPPAVVNDGAATASATPGIGVGGGGDGVTHGALCSLYVGDLDFNVTDS
QLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRIT
YSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQ
FDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDE
LKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA
QKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVM
RDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQM
RPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFFGGP
MMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMPGG
MVPVAYDMNVMPYSQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGM
LLEMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPSSQGSEGNKSGSPSDLLASLSIND
HL
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttcaagctccttcttcacattctcctcctcctcctgctgttgttaacgac
ggggctgcgacggcttctgctacccctggaatcggcgtcggcggcggtggagacggagtc
actcacggtgctctttgttctctctatgtcggagatctggatttcaatgtcaccgattct
cagctttatgactatttcaccgaggtgtgtcaggttgtatctgttcgtgtttgtcgtgat
gctgctaccaatacttctcttggttatggttatgtcaactacagcaacaccgacgatgcg
gagaaggcaatgcagaagttgaactacagttatctcaatgggaagatgattcggattact
tactcttctcgtgactcttctgcccgtagaagtggggttgggaatttgtttgtaaagaat
ttggataagtcagttgacaacaaaactctgcacgaggcgttttccgggtgtgggactatt
gtgtcctgtaaggttgctactgatcacatgggtcagtctagaggatatgggtttgtgcag
tttgacactgaggattcagctaagaatgctattgagaagctgaatgggaaagtgttgaat
gacaaacagatttttgttggaccttttcttcgtaaggaggaaagagagtctgctgctgat
aagatgaagtttactaatgtttatgtgaagaatctttcggaggcgactactgacgatgag
ttgaagactacttttggtcagtatggtagtatctcgagcgctgtagttatgagggatgga
gatgggaaatccaggtgttttggatttgtcaactttgagaatcctgaagatgcagctcgt
gctgttgaagctctcaatggaaagaagtttgatgataaggagtggtatgtgggtaaagct
cagaagaaatctgagagggaacttgagttgagccggagatatgaacaaggctcaagtgat
ggtggaaacaaatttgatgggttgaatttatatgttaagaaccttgatgataccgtcacc
gatgagaagttgcgcgagttgtttgccgaatttggtacaatcacctcttgcaaggttatg
cgggaccctagtggtactagcaaaggatcaggatttgttgccttctctgctgccagtgaa
gcttcaagagtgctgaatgaaatgaatggtaaaatggttggtggcaaaccgttgtatgtt
gctcttgcacagaggaaagaagaaaggagggctaagctgcaggcacagttttctcaaatg
agacctgcttttatccccggtgtgggtcctcgaatgccaatatttacaggtggtgctcca
ggtcttggacaacagattttttacggtcaaggacctccaccaatcatccctcaccagcct
ggatttggatatcagcctcagctggttcctggaatgaggccggccttttttggtggaccg
atgatgcagccaggtcagcaaggtccacgaccaggtggcagacggtcaggtgatggaccc
atgcgccatcagcatcagcagccaatgccttacatgcagccacagatgatgccaagagga
cgagggtaccggtacccttctggtggtagaaacatgcctgacggtccaatgccaggagga
atggttccagttgcttatgacatgaatgtaatgccgtatagtcagcctatgtccgctggt
caattggctacttcccttgctaatgctacacctgctcaacagagaacacttcttggtgag
agtctatatccattagtggaccagatagagagtgagcacgctgcgaaagtgactggtatg
cttctggaaatggatcagaccgaggttttgcatctgctcgagtcaccagaggctctaaat
gccaaagtttcagaggcattagatgtgttgagaaacgtgaatcagccatcttcacaggga
agtgaaggcaacaaaagtggaagtccaagtgatctcttggcttcactttccatcaatgat
catttatga
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integrated database retrieval system
