Arabidopsis thaliana (thale cress): AT4G38130
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Entry
AT4G38130 CDS
T00041
Symbol
HD1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03082
ATP-dependent chromatin remodeling
ath03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
AT4G38130 (HD1)
03083 Polycomb repressive complex
AT4G38130 (HD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ath03036
]
AT4G38130 (HD1)
Enzymes [BR:
ath01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
AT4G38130 (HD1)
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
AT4G38130 (HD1)
HDAC complexes
Sin3A-HDAC complex
AT4G38130 (HD1)
BRAF-HDAC complex
AT4G38130 (HD1)
REST complex
AT4G38130 (HD1)
SHIP complex
AT4G38130 (HD1)
MiDAC complex
AT4G38130 (HD1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
AT4G38130 (HD1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
AT4G38130 (HD1)
Chromatin remodeling factors
NuRD complex
AT4G38130 (HD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
829969
NCBI-ProteinID:
NP_195526
TAIR:
AT4G38130
UniProt:
O22446
A0A178UVX8
LinkDB
All DBs
Position
4:complement(17896278..17899509)
Genome browser
AA seq
501 aa
AA seq
DB search
MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGI
DDESYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNMEN
KNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDPDSDMDV
DDDRKPIPSRVKREAVEPDTKDKDGLKGIMERGKGCEVEVDESGSTKVTGVNPVGVEEAS
VKMEEEGTNKGGAEQAFPPKT
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggatactggcggcaattcgctggcgtccggacctgatggtgtgaagaggaaagtttgt
tatttctatgaccctgaggtcggcaattactactatggccaaggtcatcccatgaagccc
catcgcatccgcatgacccatgccctcctcgctcactacggtctccttcagcatatgcag
gttctcaagcccttccctgcccgcgaccgtgatctctgccgcttccacgccgacgactat
gtctcttttctccgcagcattacccctgaaacccagcaagatcagattcgccaacttaag
cgcttcaatgttggtgaagactgtcccgtctttgacggcctttattccttttgccagacc
tatgctggaggatctgttggtggctctgtcaagcttaaccacggcctctgcgatattgcc
atcaactgggctggtggtctccatcacgctaagaagtgcgaggcctctggcttctgttac
gtcaatgatatcgtcttagctatcctagagctccttaagcagcatgagcgtgttctttat
gtcgatattgatatccaccacggggatggagtggaggaggcattttatgctactgacagg
gttatgactgtctcgtttcataaatttggtgattactttcccggtacaggtcacattcag
gatataggttatggtagcggaaagtactattctctcaatgtaccactggatgatggaatc
gatgatgagagctatcatctgttattcaagcccatcatggggaaagttatggaaattttc
cgaccaggggctgtggtattgcaatgtggtgctgattcattgtctggtgataggttgggg
tgctttaatctttcaatcaaaggtcatgctgagtgcgtcaaatttatgagatcgttcaat
gttcccctactgctcttgggtggtggtggttacactatccgcaatgttgcccgttgctgg
tgctacgagactggagttgcacttggagttgaagttgaagacaagatgccggagcatgaa
tattatgaatactttggtccagactatacacttcacgttgctccaagtaacatggaaaat
aagaattctcgtcagatgcttgaagagattcgcaatgaccttctccacaatctctctaag
cttcagcatgctccaagtgtaccatttcaggaaagaccacctgatacagagactcccgag
gttgatgaagaccaagaagatggggataaaagatgggatccggattcagacatggatgtt
gatgatgaccgtaaacctataccaagcagagtaaaaagagaagctgttgaaccagataca
aaggacaaggatggactgaaaggaattatggagcgtggaaaaggttgtgaggtggaggtg
gatgagagtggaagcactaaggttacaggagtaaacccagtgggagtggaggaagcaagt
gtgaaaatggaagaggaaggaacaaacaagggtggggcggagcaggcgtttcctcctaaa
acataa
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