Arabidopsis thaliana (thale cress): AT5G57160
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Entry
AT5G57160 CDS
T00041
Symbol
ATLIG4
Name
(RefSeq) DNA ligase IV
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AT5G57160 (ATLIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT5G57160 (ATLIG4)
Enzymes [BR:
ath01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AT5G57160 (ATLIG4)
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
AT5G57160 (ATLIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
835822
NCBI-ProteinID:
NP_568851
TAIR:
AT5G57160
UniProt:
Q9LL84
A0A5S9YH46
LinkDB
All DBs
Position
5:complement(23154965..23161826)
Genome browser
AA seq
1219 aa
AA seq
DB search
MTEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEK
SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAW
KKLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAFDVLYVGDTSVIHQSLKER
HELLKKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGI
VLKDLESKWEPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADR
AEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP
DVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESESTQDNPKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMI
FYFVNVPRSHSLETFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFS
WVLDCCSRNKMLPLLPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQS
EDSKSIDYYKKKLCPEKRWSCLLSCCVYFYPYSQTLSTEEEALLGIMAKRLMLEVLMAGG
KVSNNLAHASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLLKKRLHVVSSHWLEESLQREE
KLCEDVYTLRPKYMEESDTEESDKSEHDTTEVASQGSAQTKEPASSKIAITSSRGRSNTR
AVKRGRSSTNSLQRVQRRRGKQPSKISGDETEESDASEEKVSTRLSDIAEETDSFGEAQR
NSSRGKCAKRGKSRVGQTQRVQRSRRGKKAAKIGGDESDENDELDGNNNVSADAEEGNAA
GRSVENEETREPDIAKYTESQQRDNTVAVEEALQDSRNAKTEMDMKEKLQIHEDPLQAML
MKMFPIPSQKTTETSNRTTGEYRKANVSGECESSEKRKLDAETDNTSVNAGAESDVVPPL
VKKKKVSYRDVAGELLKDW
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagatcaaattcagcgtactggtatctctctttaactggattcaaaaaagc
aaaacctcatctcagaaacgatccaaattccgcaagtttctcgacacttactgcaaaccc
tccgactacttcgtcgccgtccgtttaatcattccgtcgcttgatcgagaacgaggtagc
tacggccttaaagagtcagtgctcgccacgtgtctgatcgacgcacttggtatctcgcgt
gatgctcctgatgctgttcgtcttctcaattggcgtaaaggaggaactgctaaagctgga
gccaatgctggaaacttctccttaattgctgctgaggtattgcaacgtagacaaggaatg
gcttctggcggtttgactattaaggaattgaatgatttgcttgatcgtttggcttcaagt
gagaacagagcggagaaaactttggttctttctacattgattcagaagacaaatgctcag
gagatgaagtgggtcattaggattattctaaaagatttgaaactgggaatgagtgagaag
agcatttttcaggagttccatccagatgctgaggacttgtttaatgtcacatgtgatttg
aaactagtctgtgaaaagttgagggatcgacaccaacggcacaagcgccaggatatagag
gttggaaaagccgtacgaccccagttagctatgcgtattggtgacgtaaatgctgcttgg
aagaagctgcatgggaaagatgtagttgctgaatgcaaatttgatggggatcgcatacaa
atacacaaaaatgggactgacatacattacttctctaggaacttccttgaccattctgaa
tacgcacatgccatgtcggatcttattgtacaaaatatattggtggacaagtgtatcctt
gatggtgaaatgttggtctgggatacatctctgaatcggtttgctgagtttggttcgaat
caggaaatagccaaggcagcaagggagggtcttgacagccataaacagttgtgttatgtt
gcctttgatgttctttatgttggcgatactagcgtcatccaccagagtttgaaggaacgg
catgaactgctgaagaaagtggtcaaacctttaaaaggtcggctcgaagttttagtacct
gaaggtggtctcaatgttcaccgcccttcaggggaacctagttggtctattgttgttcat
gctgctgctgatgttgagcgatttttcaaagaaacagttgaaaacagagatgaaggaatt
gtgcttaaagacctggaatcaaaatgggaacctggagatcgtagtggcaagtggatgaaa
ttgaagcctgaatatatccgggctggtgctgacctggatgttcttataataggaggatac
tatggctccggacgtcgtggaggagaggtagcacagtttcttgtagccttggctgaccgg
gcagaggcaaatgtatatcccaggcgatttatgtccttttgtagagttggcactgggctt
tctgatgatgagcttaacactgttgtaagcaaactgaagccttatttcagaaaaaatgag
cacccaaagaaggctccaccaagcttctatcaggtcactaatcactccaaagagagaccg
gatgtttggattgacagcccggaaaaatcaataatactttcaatcactagtgatatcagg
acgataaggtctgaggtgtttgttgcaccttacagtctgaggtttcctcgtattgataaa
gtaagatatgacaagccttggcatgaatgtcttgatgtgcaggcttttgtggaattggtg
aattcgagtaacggcaccacacagaaacagaaggagtctgaaagcacacaggacaatccg
aaagtcaataaatcctccaagagaggagagaaaaagaatgtctctcttgttccctctcag
tttattcaaactgatgtatcggatatcaagggcaagacctcaatcttctcaaatatgata
ttttattttgttaacgtgcctcggtcccattctcttgagacattccacaaaatggtggtt
gaaaacggagggaagttttcaatgaacttaaacaactcagtgactcattgcattgcagca
gaaagcagtggaataaagtatcaggcagcaaagcgtcagcgagatgtcatccacttttca
tgggtcttagattgttgttcacgaaataagatgcttcctttgctgccaaagtacttcctc
cacctcactgatgcttcaaggacaaaattacaggatgatattgatgaattttctgattct
tattactgggatttagaccttgaaggtctcaaacaggtcttaagcaatgccaagcaatct
gaagattcaaaatctattgactactacaagaaaaagttatgtcctgaaaaaagatggtcc
tgcctcttaagctgctgtgtttacttttacccgtatagtcaaacattgagcactgaagag
gaagccctattgggaattatggctaagagattaatgcttgaagtcttaatggctggtggt
aaagttagcaataatcttgctcatgcgtcgcaccttgtagttcttgctatggcagaagaa
cctttggattttactttagtttcgaaaagtttcagcgaaatggagaaacgtcttttgctg
aagaaaaggcttcatgttgttagctcgcactggttagaggaaagcttgcaaagagaggaa
aaactgtgcgaggatgtctacactctgaggcctaagtatatggaagagtctgatactgaa
gaatcagataaatccgaacatgatacaacggaagtagcttcccaaggtagtgctcaaacc
aaagagccagcttcctctaaaattgcaattacgagttcaagaggacggtcaaatactcga
gctgttaaaaggggaaggtcttctacaaactcactgcaacgagtacagagacgcagaggc
aagcagccgtctaagataagcggagatgaaacagaggaaagtgatgcttctgaagaaaag
gtttcaacaagactcagtgatatagcagaagagacggattcgtttggtgaggctcaaaga
aactctagcagaggaaaatgtgcgaagagaggaaagtctcgtgtgggacaaacccaaaga
gtacagagatcacgcagaggcaagaaagctgcgaagataggaggagatgagtctgatgaa
aatgatgaattagatggcaataacaatgtgtcagcagatgcggaagagggtaatgcagct
ggtagatctgtggaaaacgaagaaacccgagagcctgacatagcgaagtacacagaatca
cagcaaagagacaacacagtagcagttgaagaggccttacaagattctagaaatgcaaag
acggagatggatatgaaagagaagttacaaatccatgaggatccactacaagctatgtta
atgaaaatgttccctattcccagtcaaaaaaccacagagacatcaaaccgaaccactggg
gaatatagaaaggctaatgtttctggtgaatgtgagtcttcagagaaaagaaaactcgac
gctgagactgataatacatctgtgaacgcaggcgcagaatcagacgtagttcctcctcta
gtgaagaaaaagaaagtcagctaccgggatgttgccggagaactgctcaaagactggtga
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integrated database retrieval system
