Actinocatenispora thailandica: Athai_04920
Help
Entry
Athai_04920 CDS
T07045
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
atl
Actinocatenispora thailandica
Pathway
atl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Athai_04920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atl03400
]
Athai_04920 (mfd)
Enzymes [BR:
atl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Athai_04920 (mfd)
DNA repair and recombination proteins [BR:
atl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Athai_04920 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
SLFN-g3_helicase
UB2H
Motif
Other DBs
NCBI-ProteinID:
BCJ32989
UniProt:
A0A7R7HVK5
LinkDB
All DBs
Position
533975..537625
Genome browser
AA seq
1216 aa
AA seq
DB search
MKLAGLLSAALADPALARARDTARDGGPAAQRLDLTAPPALRPFVVAAVAADAATGAGRP
VLAVTATEREADDLAEALRSLLPPDEVVSYPAWETLPHERLSPRSDTVARRLSILRRLAH
PVAGEPAQGPIRVVCSAVRSVLQPQLRGLGDLAPVRLAAGDTADLEEVARRLTDLAYSRV
DMVGGRGEFAVRGGILDVFPPTEEHPLRVEFWGDEVDEIRPFAVADQRSFEPSGDKPVMI
APPCRELLLTPQVRDRAAVLAADHPGLAEMCEKLAEGIPVEGMESLTPALVGGDNLELLV
DGMPTGTVVLACDPERIRSRAHDLVSTSAEFLAASWAAAAAGGAEPIDLGAAAFHSLADV
RGHADELGMPWWSLSPFGTVEAETAPSSIEAELAEIDPELASTVDDVVPDDAVALGAQPA
PLYHGDGAALLGDVRRWVADGYAVALVFEGHGPAQRTVELLHEADQGAVLVDAIADPPKP
QSILVGCGGLDRGFVDETGRIVVVTGNDITGGKGASTKDMRRMPSRRRKNAIDPLELKPG
DYVVHEQHGIAKYLDMVRRTINGAEREYLVLEYAPSKRNQPGDQLFVPTDQLDQLTRYVG
GEHPTLSKMGGADWQKTKSRARKAVKEIAAELIRLYAARQNSPGHAFGPDTPWQRELEDA
FPFQETPDQLEAIDEVKADMRKQYPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLV
PTTLLAQQHYNTFTERMAQFPVNIRTLSRFNTATETEQTLTGIADGSADIVLGTHRLLSS
QTRFKQLGLVIVDEEQRFGVEHKEYLKQLRTHVDVLTMSATPIPRTLEMAVTGIREMSVI
ATPPEERHPVLTFVGAYADKQVAAAVRRELLRDGQVFYLHNRVESIEKAARRIRELVPEA
RVAVAHGQMGEERLEKIMLDFWNREIDVLVCTTIVESGIDIPNANTLIVERADILGLSQL
HQIRGRVGRGRERAYAYFLYPGEKPLTEQAHERLATIAQHTELGAGMFVAMKDLEIRGAG
NLLGGQQSGHIEGVGFDLYVRMVGEAVQAFKGEAPEELAEVKVDLPVDAHLPHDYISVER
LRLEMYRKLAEVRDEAALDEVRAELSDRYGEIPTPVENLIQVAHFRLLARRYGLTDVSLQ
GRHIRFTPMPLPDSKQLRLKRFYPDASYKSTVDTVSVNRPSTRRVGGEPMRDLPLLNWCA
ELITTILDAPAPAKTS
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcgccggcctgctctccgctgccctcgccgacccggccctcgcccgcgcccgc
gacaccgcccgggacggcggcccggccgcgcagcggctggacctgaccgcgccgccggcg
ctgcggccgttcgtggtcgccgcggtcgccgcggacgcggcgaccggcgccggccggccg
gtgctcgcggtcaccgccaccgagcgggaggccgacgacctggccgaggcgctgcgctcg
ctgctgccgccggacgaggtcgtgtcgtaccccgcctgggagacgctgccgcacgagcgc
ctgtcgccccggtcggacaccgtggcccgccggctgtcgatcctgcgccggttggcccat
ccggttgccggcgagccggcgcaggggccgatccgggtcgtctgctcggcggtgcgcagc
gtgctgcagccgcagctgcgcgggctcggtgacctcgccccggtgcgcctcgccgccggc
gacaccgccgacctggaggaggtcgcgcggcgactgaccgacctcgcgtacagccgggtc
gacatggtcggcgggcgcggcgagttcgcggtccgcggcggcatcctcgacgtgttcccg
ccgaccgaggagcacccgctgcgggtcgagttctggggcgacgaggtcgacgagatccgc
ccgttcgcggtggccgaccagcgctcgttcgagccgtccggcgacaagccggtgatgatc
gcgccgccgtgccgggagctgctgctgaccccgcaggtacgggaccgggccgcggtgctg
gccgccgaccacccgggcctggcggagatgtgcgagaagctcgccgagggcatcccggtg
gagggcatggagtcgctgaccccggcgctggtcggcggcgacaacctggaactgctggtc
gacggcatgcccaccggtacggtcgtgctggcctgcgacccggagcggatccggtcccgg
gcgcacgacctggtgtccacctcggccgagttcctggccgccagctgggccgccgcggcg
gccggcggcgcggagccgatcgacctgggcgcggcggcgttccacagcctggccgacgtg
cgcgggcacgccgacgagctgggtatgccgtggtggagcctgagcccgttcggcaccgtt
gaggcggagaccgcgccgtcctcgatcgaggccgaactcgccgagatcgatccggaactg
gcgtccaccgtggacgacgtggtgccggacgacgcggtcgcgctcggcgcccagccggcc
ccgctgtaccacggggacggtgccgcgttgctcggtgacgtgcgccgctgggtcgccgac
gggtacgcggtggcgctggtcttcgagggccacggcccggcgcagcgcaccgtcgagctg
ctgcacgaggcggaccagggtgcggtgctggtcgacgcgatcgccgacccgccgaagccg
cagtcgatcctggtcggctgcggcgggctggaccgcggattcgtcgacgagacgggccgc
atcgtggtcgtcaccggcaacgacatcaccggcggcaagggcgcgtccaccaaggacatg
cgccggatgccgagccgccggcggaagaacgcgatcgacccgctggagctcaaacccggc
gactacgtggtgcacgagcagcacggcatcgcgaagtacctggacatggtgcgccgcacc
atcaacggcgccgagcgcgaatatctggtgctggagtacgcgccgagcaagcgcaaccag
cccggcgaccagctgttcgtgccgaccgaccagctcgaccagctcactcgctacgtcggt
ggcgagcacccgacgctgtccaagatgggcggtgccgactggcagaagaccaagtcccgg
gcgcgcaaggcggtcaaggagatcgccgccgagctgatccggctgtacgcggcgcggcag
aactcgccggggcacgcgttcggcccggacaccccgtggcagcgcgagctggaggacgcg
ttcccgttccaggagacgccggaccagctggaggccatcgacgaggtcaaggccgacatg
cgcaagcagtacccgatggaccggctgatctgcggcgacgtcgggtacggcaagaccgag
atcgcggtgcgggccgcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtg
ccgaccacgctgctggcccagcagcactacaacacgttcaccgagcggatggcgcagttc
ccggtgaacatccgcacgctgtcccggttcaacacggcgacggagaccgagcagacgctc
accggaatcgccgacggcagcgccgacatcgtcctcggtacgcaccgcctgctgtcctcg
cagacccggttcaagcagctcgggctggtgatcgtggacgaggagcagcggttcggcgtc
gagcacaaggagtacctcaagcagctgcgcacccacgtcgacgtgctgacgatgtccgcg
acgccgatcccgcgcaccctcgagatggcggtgaccggcatccgcgagatgtcggtgatc
gccaccccgccggaggagcggcacccggtgctcaccttcgtcggggcgtacgcggacaag
caggtcgccgccgcggttcggcgtgagctgctgcgcgacggccaggtgttctacctgcac
aaccgggtcgagtcgatcgagaaggcggcccgccggatccgggaactggtgcccgaggcg
cgggtcgcggtggcgcacgggcagatgggcgaggaacgcctggaaaagatcatgctcgac
ttctggaaccgcgagatcgacgtgctggtctgcaccacgatcgtcgagtcgggcatcgac
atcccgaacgcgaacacgctgatcgtggagcgcgccgacatcctcggcctgtcccagctg
caccagatccgtggccgggtcggtcgcggccgggagcgcgcctacgcctacttcctctat
ccgggggagaagccgctgaccgagcaggcgcacgagcggctggcgacgatcgcgcagcac
accgagctgggcgccggcatgttcgtggcgatgaaggacctggagatccggggcgccggc
aacctgctgggcggccagcagtccgggcacatcgagggcgtcggcttcgacctgtacgtg
cggatggtcggcgaggcggtccaggcgttcaagggcgaggcgccggaggaactggctgag
gtgaaggtcgacctgccggtcgacgcgcacctgccgcacgactacatctcggtcgagcgg
ctacgcctggagatgtaccgcaagctcgccgaggtccgcgacgaggcggcgctggacgag
gtccgcgccgagctgtccgaccggtacggggagatcccgaccccggtggagaacctcatc
caggtggcgcacttccggctgctcgcccggcgatacgggctgaccgacgtgtcgttgcag
ggccggcacatccggttcaccccgatgccgctgcccgactcgaagcagctgcggctcaag
cggttctacccggacgccagctacaagtccactgtggacactgtcagtgtgaaccggccg
tcgacccgccgggtcggcggcgaaccgatgcgggacctgccgctgctcaactggtgcgcc
gagctgatcaccaccatcctggacgccccggcaccggcgaagacgagctga
DBGET
integrated database retrieval system
