Amborella trichopoda: 18421863
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Entry
18421863 CDS
T02990
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
atr
Amborella trichopoda
Pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18421863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18421863
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18421863
Spliceosome [BR:
atr03041
]
Complex A
U2 snRNP components
U2 related factors
18421863
Complex B
18421863
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
18421863
NCBI-ProteinID:
XP_006826729
UniProt:
W1NEU6
LinkDB
All DBs
Position
Unknown
AA seq
1275 aa
AA seq
DB search
MDEGKQRSRRDEWEKRKEDSKRGDRDREREGEKEKIRDLDREKRESEESERVGDADLQKG
DREDSGKIRVLEAADRRQREGEKVRERTGERREREKARDRDSERRERESDKVRDRDLEKR
ERERDIDKVSEKRERDREREKDSDKVRDRDSEKREREKERGRSSERARDYRDSEKREREY
RRVERERSSEGKHRDKYKDSRYKESEKDGSRSRRRDEREKERGRDREEDPERLKEKGKDR
ERDDGARTRERAREKDRERVREREERDREREEREREREREEKEERERGRDRMREREKRRD
EDRDREDEIHERKKRRREDEQGSERESSRYKEENGDDVRRKKSEEELKKGRKEEDVEEEN
RKLDEEMDKRRRRVQEWQELKRKREEQEREKRGEEKTEEEPPKSGKNWTLEGEESDDEES
EHPSTKTAAAASKGPVVPVANGDAKSDDPMMVDSEDNGNGNRHPLPDENGEEEGEEIDPL
DAFMNSMVLPEVEKLKNAEAAASTDNMLAELGKKKASREVLGNGDQSKKASKNATGRIIP
GEDSDSDYEHMENDEAPLEDEDDDEFIKRVKKTKAEKLSIVDHSKIQYPPFRKNFYIEVK
EISRMTTEEVAAYRKMLELKIHGKDVPMPIKTWNQTGLTSKILETIKKSNFEKPMPIQAQ
ALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVPGDGPIGLIMAPTRELVQQI
HSDIKKFAKVVGVNCVPVYGGSGVAQQISDLKRGTEIVVCTPGRMIDILCTSGGKISNLR
RVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLNKPVEI
QVGGRSVVNKDITQLVEVRQDNERFLRLLELLGEWYEKGKILIFVHSQEKCDSLFKELLR
HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVVNYDVPNHYE
DYVHRVGRTGRAGRKGCAVTFITEEDARYAPDLVKALELSEQAVPDDLKQVADGFMAKVN
QGTEHAHGTGYGGSGFKFNEEEDEARRAAKKAQAREYGFEEDKSDSDSEEEGGGVRKAGG
DISQAAAFAQAAAIAAASKVAMTSSLSLPPVSSQFLPLQTTTAAGAGMGVLGAPPSLPVV
GGLPNDAAARAAALAAALNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLG
PISEWTGAAITTRGQYYPPGKIPGPGERKLYLFIEGPTESSVKKAKAEVKRVLEDYTAQS
LSLPGAGQPGKYSVL
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagggaagcagagatcgaggcgagatgagtgggagaagagaaaggaggattcg
aagagaggcgatcgcgatagagagagagaaggcgagaaggagaaaattagggatttggat
cgggagaagagagagagtgaggagagcgagagagttggagatgcggatttgcagaagggt
gatagagaggacagtgggaaaattagggttttggaggcagcggacaggagacagagagaa
ggcgagaaagtcagggaaaggactggtgagagaagagagagagagaaggcgagggatcga
gattcagagaggagagagagggagagtgataaagtcagggatagagatttggagaagaga
gagagggagagggatattgacaaggtttcagagaagagagagagagatagagagagggag
aaggacagtgacaaggttagggacagggattctgagaagagagagagggagaaggagaga
gggcgaagcagtgagagagctagggattatcgggattcggagaagagagagagggagtac
cgtcgtgtggagagagaaaggagttctgagggaaagcacagagacaagtataaggattca
aggtataaggagtctgaaaaggatggcagcagaagtaggagaagggatgagagagagaag
gaaagggggcgggatcgggaggaagaccctgagaggctgaaagagaagggcaaggataga
gagagagatgatggggccagaacaagggagagagcaagagaaaaggatagggagagggtt
agagagagggaggagagggacagggagagggaagagagagaaagggagagggagagggag
gagaaggaagagagagaaagagggagggataggatgagagagagagagaagcggagagat
gaggacagagacagggaagacgagatacatgagaggaagaagaggagaagggaggatgag
caaggaagtgagagagagagcagcaggtacaaggaagagaatggtgatgatgttcggagg
aagaagagtgaggaggagctgaagaagggccgaaaagaggaggatgtggaagaggagaac
aggaaacttgatgaggagatggataaaaggagacgcagagttcaggagtggcaagagctt
aaaaggaaaagagaggaacaggagagagagaagaggggcgaagagaaaactgaagaagag
cctccgaaatctggtaaaaattggaccttggaaggagaagaatctgacgatgaagaaagt
gagcatcctagtaccaagactgctgctgccgcttcaaaaggccctgttgttcctgttgct
aatggggatgcaaagtccgatgatcccatgatggtagactctgaggacaatggtaatggt
aatagacatcctctcccggacgagaatggggaggaggagggggaggaaattgacccatta
gatgccttcatgaactcaatggtgctgcccgaggttgaaaaactgaaaaatgcagaagca
gctgcctcgactgataatatgctagctgagctgggaaagaagaaggcttcgagagaggtg
ttgggtaatggggatcagtcaaagaaagcttccaagaacgcaactgggaggattattcca
ggtgaggattctgactccgactatgaacatatggagaatgatgaagctccattggaagat
gaagatgatgatgagttcataaaaagagtgaaaaagacaaaggcagagaagctgtcaata
gtcgaccattcgaaaatccagtacccaccatttagaaagaacttttatattgaggtgaag
gagatttccagaatgacaacagaggaagttgctgcttataggaaaatgctggagctgaag
atccatgggaaagatgttccgatgcccataaaaacatggaaccagactgggttaacgagc
aagattctcgaaaccataaaaaagtcgaactttgagaagccaatgcctattcaagctcaa
gccttgcccataattatgagtggccgggactgcataggcattgcaaagactggttcgggt
aagactcttgcctttgttttacccatgttgaggcacatcaaggatcagcctcctgtggtt
cctggtgatgggccgatcgggcttataatggcacccacaagagaactagtccagcaaatt
cacagtgatatcaagaagtttgcgaaggttgtgggtgttaactgcgttcctgtgtatggt
ggttccggtgttgctcagcagatcagcgatttaaagagaggtaccgagattgttgtatgt
acaccagggaggatgatagacatcctctgtacgagtggtggaaagatctcaaatcttaga
agggttacttacctggtcatggatgaagccgaccgaatgtttgatatgggttttgagcca
cagattactcggatagtccaaaacacaagaccagatagacagactgttcttttctctgct
acttttcctcgacaggtggagatactggcaaggaaagttttgaacaagcctgtcgaaatc
caggttgggggaaggagcgtcgtgaacaaggatataacgcagttggtggaggttagacag
gacaatgagaggttcctcaggctgttggagcttcttggggagtggtacgagaaaggaaag
atcctgattttcgttcattcccaagagaaatgtgactccttgttcaaggaattattgagg
catggctacccatgcctctctctccatggggccaaggaccaaactgatagggaatccact
atttcagattttaagagcaatgtgtgcaacctgttaatagcaacaagtattgctgcaagg
ggattagatgtgaaggagcttgagcttgtggtgaactatgacgtcccaaatcactatgaa
gactatgttcacagagtgggtcgaactggtcgggctggcaggaagggttgtgctgtgact
ttcataacagaggaagatgcacgttatgcacctgaccttgtcaaagctctcgagctctca
gaacaagcagtgcctgatgatctaaagcaggttgcggatgggttcatggccaaggtgaac
caggggaccgagcatgcacatgggactggttatggtgggagtgggttcaagttcaatgaa
gaggaagatgaagccaggagagctgcaaagaaagctcaggcaagggaatatggttttgag
gaggataagtctgattcagactctgaagaggaaggtggaggggttcgcaaggcagggggt
gatatttcacaagctgctgcttttgctcaggctgctgccattgcggcagcatctaaggtc
gctatgacctcatcattgtcattgcctcctgtgtcatctcaattccttcctttgcagacc
actactgctgctggtgctggtatgggtgttttgggagccccaccgtcattgcctgttgtt
ggtgggctacctaatgatgcagctgctcgagctgccgcactagctgctgcgcttaatctg
caacacaatttagcaaagatacaagcagacgctatgcctgaacactatgaagccgagttg
gagattaatgatttcccacagaatgctcgttggaaggtgacccacaaagaaactttgggt
ccaatttctgaatggactggagcagctattacaaccaggggacagtattatccacctggt
aagatccctggtcctggagagcgcaagctttacctcttcattgaaggcccaacagagtca
tctgtgaagaaagcgaaagctgaagtgaaacgggtgctagaagactatactgcccagtca
ctgtcgttgcctggtgcaggtcaaccgggaaagtattctgttttgtaa
DBGET
integrated database retrieval system
