KEGG   Amborella trichopoda: 18430622
Entry
18430622          CDS       T02990                                 
Name
(RefSeq) histone deacetylase 6 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
atr  Amborella trichopoda
Pathway
atr03082  ATP-dependent chromatin remodeling
atr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    18430622
   03083 Polycomb repressive complex
    18430622
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:atr03036]
    18430622
Enzymes [BR:atr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     18430622
Chromosome and associated proteins [BR:atr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     18430622
   HDAC complexes
    Sin3A-HDAC complex
     18430622
    BRAF-HDAC complex
     18430622
    REST complex
     18430622
    SHIP complex
     18430622
    MiDAC complex
     18430622
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     18430622
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    18430622
  Chromatin remodeling factors
   NuRD complex
    18430622
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 18430622
NCBI-ProteinID: XP_006840835
UniProt: W1P6A4
LinkDB
Position
Unknown
AA seq 492 aa
MERSSGIALSSGPDAVKRKVSYFYDPGIGNYYYGQGHPMKPHRIRMAHNLIVHYNLHHLM
EINRPCLANTDDIMKFHSEDYVNFLQTVTPETQHEQMRQLKKFNVGEDCPVFDGIFNFCR
ASAGGSIGAAVKLNRGDADIGINWAGGLHHAKKCEASGFCYVNDIVLGILELLKVHRRVL
YVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGHLKDVGFGKGKYYALNVPLNDG
MDDESFQRLFRPVIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSF
NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNSLPYNEYYEYFGPDYTLHIDPSNME
NQNSPKDLEKIRAVLLEQLSRVQHVPSVPFHSRPPNFDLPEEEEEDLERRPKCRRIWDGD
YCASESEEDQRPRENDANDRDQSVGNSPARRVTTKTQTAVNEKQGDEETEMPDALDEKGE
NDETDENDESTE
NT seq 1479 nt   +upstreamnt  +downstreamnt
atggagaggtcttctggtatagcactctcttctggccctgacgcagtcaagagaaaggtc
tcatacttttatgaccccggtattggtaactattactatggccaagggcaccccatgaag
ccccatagaatcagaatggcccataacctcattgttcattacaatctccaccatctcatg
gagatcaataggccttgcttggccaacacagatgatataatgaagtttcattctgaggat
tatgttaactttttgcagactgttacacctgagactcagcacgagcagatgaggcagttg
aagaagtttaatgttggtgaggattgccctgtgtttgatggaattttcaatttttgccgg
gcctccgctgggggttcgattggggcggcagtgaaattgaatcggggtgatgcagatatt
gggattaattgggctggggggcttcatcatgcaaagaaatgtgaggcatcagggttttgc
tatgtgaatgatattgtgttggggatcttggagctgttgaaagtccaccgtcgtgttctg
tatgtggatattgacatccatcatggagatggtgtggaggaggcattctacacaactgac
agagtcatgactgtttctttccacaagtttggcgattacttccctggaactggccatctt
aaggatgtaggatttgggaaagggaagtattatgccctcaatgttcccttaaatgacgga
atggatgacgagagtttccaaagactttttagacccgttatacaaaaagttatggaggtt
tatcagccagaagctgtggttcttcaatgtggggcagattctttgtctggggacaggctg
gggtgcttcaatttgtcagttcgtggacatgcagattgcctccgtttcctaaggtctttc
aatgtccctctgatggttttaggtgggggtggatatactatccgtaatgttgctcgttgt
tggtgctatgagactgcagttgcagtaggagtggaacctgataacagcttgccttacaat
gaatattatgagtacttcggtccagattacactctacatattgacccaagcaatatggag
aatcaaaactcaccaaaagatctcgagaaaatcagggctgtgttgctggagcagctatcg
agagtacaacatgtacctagtgtgccatttcatagtagacctcccaattttgatcttcct
gaggaggaggaagaagatttggagcgcagacctaagtgtcggcgcatatgggatggagat
tattgtgcatctgaatcagaggaagatcaaaggcctcgagaaaatgatgccaatgatcgt
gaccaatctgttgggaattctcccgcaaggagggtaaccaccaagacccagactgctgta
aatgagaaacaaggagatgaagaaactgaaatgccggatgcgctagatgagaaaggagag
aatgatgagacggacgagaatgatgaaagcacggagtga

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