Amborella trichopoda: 18430622
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Entry
18430622 CDS
T02990
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
atr
Amborella trichopoda
Pathway
atr03082
ATP-dependent chromatin remodeling
atr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18430622
03083 Polycomb repressive complex
18430622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
atr03036
]
18430622
Enzymes [BR:
atr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
18430622
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
18430622
HDAC complexes
Sin3A-HDAC complex
18430622
BRAF-HDAC complex
18430622
REST complex
18430622
SHIP complex
18430622
MiDAC complex
18430622
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
18430622
Heterochromatin formation proteins
Other heterochromatin formation proteins
18430622
Chromatin remodeling factors
NuRD complex
18430622
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
18430622
NCBI-ProteinID:
XP_006840835
UniProt:
W1P6A4
LinkDB
All DBs
Position
Unknown
AA seq
492 aa
AA seq
DB search
MERSSGIALSSGPDAVKRKVSYFYDPGIGNYYYGQGHPMKPHRIRMAHNLIVHYNLHHLM
EINRPCLANTDDIMKFHSEDYVNFLQTVTPETQHEQMRQLKKFNVGEDCPVFDGIFNFCR
ASAGGSIGAAVKLNRGDADIGINWAGGLHHAKKCEASGFCYVNDIVLGILELLKVHRRVL
YVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGHLKDVGFGKGKYYALNVPLNDG
MDDESFQRLFRPVIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSF
NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNSLPYNEYYEYFGPDYTLHIDPSNME
NQNSPKDLEKIRAVLLEQLSRVQHVPSVPFHSRPPNFDLPEEEEEDLERRPKCRRIWDGD
YCASESEEDQRPRENDANDRDQSVGNSPARRVTTKTQTAVNEKQGDEETEMPDALDEKGE
NDETDENDESTE
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggagaggtcttctggtatagcactctcttctggccctgacgcagtcaagagaaaggtc
tcatacttttatgaccccggtattggtaactattactatggccaagggcaccccatgaag
ccccatagaatcagaatggcccataacctcattgttcattacaatctccaccatctcatg
gagatcaataggccttgcttggccaacacagatgatataatgaagtttcattctgaggat
tatgttaactttttgcagactgttacacctgagactcagcacgagcagatgaggcagttg
aagaagtttaatgttggtgaggattgccctgtgtttgatggaattttcaatttttgccgg
gcctccgctgggggttcgattggggcggcagtgaaattgaatcggggtgatgcagatatt
gggattaattgggctggggggcttcatcatgcaaagaaatgtgaggcatcagggttttgc
tatgtgaatgatattgtgttggggatcttggagctgttgaaagtccaccgtcgtgttctg
tatgtggatattgacatccatcatggagatggtgtggaggaggcattctacacaactgac
agagtcatgactgtttctttccacaagtttggcgattacttccctggaactggccatctt
aaggatgtaggatttgggaaagggaagtattatgccctcaatgttcccttaaatgacgga
atggatgacgagagtttccaaagactttttagacccgttatacaaaaagttatggaggtt
tatcagccagaagctgtggttcttcaatgtggggcagattctttgtctggggacaggctg
gggtgcttcaatttgtcagttcgtggacatgcagattgcctccgtttcctaaggtctttc
aatgtccctctgatggttttaggtgggggtggatatactatccgtaatgttgctcgttgt
tggtgctatgagactgcagttgcagtaggagtggaacctgataacagcttgccttacaat
gaatattatgagtacttcggtccagattacactctacatattgacccaagcaatatggag
aatcaaaactcaccaaaagatctcgagaaaatcagggctgtgttgctggagcagctatcg
agagtacaacatgtacctagtgtgccatttcatagtagacctcccaattttgatcttcct
gaggaggaggaagaagatttggagcgcagacctaagtgtcggcgcatatgggatggagat
tattgtgcatctgaatcagaggaagatcaaaggcctcgagaaaatgatgccaatgatcgt
gaccaatctgttgggaattctcccgcaaggagggtaaccaccaagacccagactgctgta
aatgagaaacaaggagatgaagaaactgaaatgccggatgcgctagatgagaaaggagag
aatgatgagacggacgagaatgatgaaagcacggagtga
DBGET
integrated database retrieval system