Amborella trichopoda: 18431309
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Entry
18431309 CDS
T02990
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog
KO
K13100
pre-mRNA-splicing factor CWC22
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18431309
Spliceosome [BR:
atr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18431309
Complex C
U4/U6.U5 tri-SnRNP related factors
18431309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
MA3
Motif
Other DBs
NCBI-GeneID:
18431309
NCBI-ProteinID:
XP_020521154
LinkDB
All DBs
Position
Unknown
AA seq
681 aa
AA seq
DB search
MGGIRDERLERHDKEERELGRDKGDRSREAREKKIQHVRNRGSDSDGEHASLRRSAKDES
HRHESRRKATRRHHHGESDEDRNIRKLESEASDRKIEREMGEIRERDSKRKHDDRHHDRI
QSHEEEDDDERSRERKRDNGHHDRRRSYEEEDDDERSRERNSRQKMRNEDSRKREHYDRG
HHSKGGAVKEEAQRERHNRIRKGDLEDGKKLENLQINRKTTTTETNTGRSGGVYIPPFKL
AQMMKEVQDKSSIEYQRLTWDALRKSINGLVNKVNASNIKNIIPELFSENLLRGRGLFCR
SCMKSQMASPGFTDVFAALVAVVNTKFPEVGNLLLRRIVLQLKRSYKRNDKPLLLATTKF
IAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVCFVKECGSLLQDLSSQGLHGIFERF
RGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRQELDLVEQEDQFTHELSLDEEIDQE
IGLDIFKPDLQYLEHEKAYEELKKDILGDESSDEEGSDKGSDDEDEEETDEEEEEKLQIK
DETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMCRQFTVEVRHEAMFEILW
PFSRYSANHESGIQVVTVCWVSCAPMFHVSCLKKKLSKLVVLQVDRPEIDEEGTFKHEPI
AILDNKLVNKRNQAMTKVSMH
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgggtgggatcagagatgagagattagagaggcatgacaaggaagaaagggaactgggg
cgcgacaaaggtgatcgctctagggaagcgagagagaaaaagattcagcatgttcgcaat
agaggctcggattctgatggcgagcatgcttcgctaaggaggtccgctaaagatgaaagc
cacaggcatgaatcacgtcggaaggccacaagaagacatcaccatggggaatctgatgag
gatagaaacataaggaaattagaatcagaagcctcagataggaaaattgagagagaaatg
ggagagataagggagcgtgacagcaagagaaaacatgatgatagacaccatgatagaata
caatctcatgaagaagaggacgatgatgaaagaagtagggagagaaaacgtgataatgga
caccacgatagaagacgatcttatgaagaggaggatgatgatgaaagaagtagggagaga
aacagtcgtcaaaaaatgcgtaatgaggattctaggaagagggaacattatgatagggga
caccattctaaaggtggagctgtgaaggaagaagctcaacgagagagacacaatagaatc
aggaaaggagacttagaagatggaaagaaattagagaatttgcaaattaataggaaaacc
acaaccactgaaacaaatactgggagaagtggtggggtttatatccctccatttaagttg
gctcaaatgatgaaagaagttcaagacaaaagtagtattgagtatcaaagattaacatgg
gatgctctcaggaagagcataaatgggctcgtcaataaagtaaatgcatctaacataaag
aatatcattcctgagctctttagcgagaaccttcttcggggtcgagggttattttgcaga
tcatgcatgaagtcccaaatggcatctcctggtttcacggatgtctttgctgcattggtt
gctgttgtaaatacaaagtttcctgaagttgggaaccttcttttgaggagaatagtgctt
cagctcaagcggtcatataagagaaatgacaagccgcttttgcttgccactacaaaattt
atagcccatcttgtgaaccagcaagttgctcatgagattattgctttggagcttcttacc
gtgttgttagagaatcctactgatgacagtgtagaggtagcagtttgctttgtaaaggag
tgtgggtccttgctacaagacctttcttctcagggacttcatggtatctttgagcgcttt
cgtggcattcttcatgaaggagaaattgacaaaagggttcagtttttgattgaaggcctc
tttgctatacgaaaagcaaagtttcagggttatccagccgtccgtcaagaattggacctt
gtggaacaggaagaccagtttactcatgagttgtctcttgacgaagagatagatcaagaa
attggactagatatatttaagcctgatctgcaatatctggaacatgagaaggcttatgaa
gaactcaaaaaagacatccttggtgatgaatcttctgatgaagagggttcagacaaaggc
tcagatgacgaggatgaggaagaaactgatgaagaggaagaggaaaagctccagatcaag
gatgagactgagaccaatctggtcaatctacggagaacgatttatttaacaatcatgtcg
agtgtggactttgaggaggcaggacacaaactactcaaaatcaaacttgaacctggtcaa
gagatgtgtcgtcagtttactgtggaagttcgccacgaagctatgtttgagatattatgg
cccttttcccgttattcagcgaatcatgaaagtggcatacaggttgtaactgtctgttgg
gtctcgtgtgcaccaatgttccatgtatcttgcctaaaaaagaagttaagcaagcttgtt
gttctacaggtagatcggccagaaattgatgaagaagggacattcaagcatgaacctatt
gcaatcttggacaacaagctagttaacaaaagaaatcaagctatgacgaaagtctcaatg
cattga
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