Amborella trichopoda: 18432605
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Entry
18432605 CDS
T02990
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18432605
03041 Spliceosome [BR:
atr03041
]
18432605
03036 Chromosome and associated proteins [BR:
atr03036
]
18432605
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18432605
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
18432605
mRNA cycle factors
Common to processing body (P body) and stress granule
18432605
Spliceosome [BR:
atr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
18432605
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
18432605
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
18432605
NCBI-ProteinID:
XP_006842770
UniProt:
W1PBN3
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MRTSWADSVSNSAAENVTAAATNNGPASSASSRPSRSSYVPPHLRNRPPSAEPLAPTPKE
NLASTNRSAYPGPPPSQPRWGSREPARPGSGPSRGGWGNRTGGWDRGREREVNPFENDEP
AEEAFGEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGDALNENIRRCKYVKPTP
VQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMKGQYAQRPRGARTVYPLALILS
PTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER
ARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGMRQTMLFSATFPKEIQRLA
SDFLSNYIFLAVGRVGSSTDLIVQRVEYVLESDKRSHLMDLLHAQRANGTHGKQALTLVF
VETKKGADSLEHWLCMNGFPATTIHGDRSQQEREQALRSFKSGTTPILVATDVAARGLDI
PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNASLARSLSELMQEANQEV
PSWLARYAARSSYGGGGGRNRRTGGGRFGGRDFRRDGPSRGGSDYYGGGGGGNSSGMGGG
YGPSSGYGGGGYGSGVTSAWD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacttcgtgggcggattcggtctcaaattcagcagctgagaatgtaacagctgct
gccaccaacaatggcccagccagcagtgcctcttcgcgaccgtcacgatcttcttacgtt
cctcctcaccttcgtaaccgacccccatcagccgagccccttgcccctacacccaaagaa
aacctagcctccacgaaccgatctgcttacccaggcccaccaccctcccagccccgttgg
ggtagccgcgagccagccaggcctggctctgggccatctcgaggtggttggggcaaccga
actggtggttgggatcgaggtagggagagagaggttaacccttttgagaatgatgaacca
gctgaggaagcctttggtgaacaagagaatactggtatcaatttcgatgcctatgaggac
attcctgtggaaacaagtggtgataatgtgccgcctcctgtgaatactttcgccgagatt
gatttgggggatgctttgaatgagaacataaggcggtgtaagtatgtgaaaccaacaccg
gtacagcgacacgcgattccgatatcgctgggagggagggatttgatggcatgcgcacag
actgggtcagggaagacagcagcgttttgcttccccataattagcgggattatgaagggg
cagtatgcacagaggcctaggggggcacgcactgtgtaccccctcgcactgattctttct
cctacaagggagctttcttgtcagatacacgatgaagcgaaaaagttctcctatcaaacg
ggtgttagagttgtagttgcatatggaggagcaccaataaatcaacagcttcgagaattg
gaaaggggtgttgatattcttgttgcgacacctgggcgtttggtggatttgctggagaga
gcaagagtttcattgcaaatggtgaagtatttggctcttgatgaggctgatcgaatgctt
gatatgggttttgagcctcagatacggaagatagttgaacaaatggacatgcctccacga
ggaatgaggcagacaatgttattcagtgctacctttcctaaggaaatacagagattggct
tcggatttcctttcaaattatattttcctagctgttgggagggttggttctagcactgac
ctgattgttcaacgagttgaatatgttttggaatcagacaagagaagccaccttatggat
cttcttcatgctcaaagagcaaatggaactcatggcaagcaagctttgactttagtcttt
gtggagacaaagaaaggagccgattcattggagcactggttatgtatgaatgggtttcct
gcaactactattcatggtgatagatcacagcaggagagagaacaagcactaaggtccttc
aaaagtggaacaaccccaatcttggtggcaactgatgtggcagcacgaggcctcgacatt
ccccatgtggcccatgttgtgaacttcgacctgcctaatgacattgatgactatgtccac
cgtattggccgcacgggtcgtgcaggcaagatgggtcttgccactgccttcttcaatgac
aacaatgcctccttagcacgttctctctccgagctcatgcaagaggccaaccaagaggtg
ccctcttggcttgcacgttatgctgctaggtcatcctatggtggcggagggggccgaaac
aggcggactggtggtggtaggtttggtgggcgtgactttcgaagagatggcccttcacgt
ggtggtagtgattactatggtggtggtggtggtggcaatagtagtggtatgggtggtggg
tatggaccatcttctggttatggtggtggcggttatggatcaggcgttaccagtgcttgg
gactaa
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