Amborella trichopoda: 18438146
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Entry
18438146 CDS
T02990
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
atr
Amborella trichopoda
Pathway
atr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18438146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18438146
03036 Chromosome and associated proteins [BR:
atr03036
]
18438146
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
18438146
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
18438146
PBAF complex
18438146
GBAF(ncBAF) complex
18438146
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIB
RNA_pol_3_Rpc31
AsnRS_N
Motif
Other DBs
NCBI-GeneID:
18438146
NCBI-ProteinID:
XP_011624920
LinkDB
All DBs
Position
Unknown
AA seq
589 aa
AA seq
DB search
MAANNGNNQLRNVGGPSTFGNSAMNPSAMQSMASSVNPSSILHPQSQPQSQPTPHFPGPF
QTPIQAQVQAQVQAQAAFAQAQNHPFGQGPFHPQSQAQSHSIAQAHAQFQAQLQAQAQAQ
AQAQAQAQLHPQAQSISLNQSQIPNPLNASSPSLTTPNNASAKRGQQKPPARPPGPPLPN
NAASLYKSSELTPAARRKKRKLPEKQLPDRVAALLPESSLYTQLLELESRVDAALTRKKI
DIQEALKTPPTLQRMLRIFIFNTYANQTRGASEKPAQEPPSWCLRIIGRILDDGPDQEAS
GGLPKPNPNYPKFSSFFKKITVALDANLYPENPTIVWESNRSPAPVEGFDIKRKGDKEFV
AKLRLEMNCGPDKFKLSPALTEVLGVEVDTRPRIIAALWHYIKARKLQNPSDPTVFACDP
ALRKVFGDEKMKFSTVSQRISAHLSPPQAIQLEHKIRLSGINPAGNMCYDVLVDVPFPLQ
KEMTGFLAGTDKQKEIEACDEAICAAIKKIHEHRRRRAFFLGFSQSPVEFINALIASQSR
DLKLVAGEASRNAEKERRADFYNQPWVEDAVISYLNRKPAAGNDAPGST
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaataacggtaacaaccagttgagaaatgttgggggtccatcaacctttggc
aattctgcaatgaacccatcagccatgcaatccatggcttcttcagtgaacccttcttct
attcttcaccctcaatctcaaccacaatcacaacccacccctcacttcccaggcccattt
caaacacccattcaagcccaagttcaagctcaagtccaagcccaggctgcctttgcccaa
gcacaaaaccacccttttggccaaggtccattccatccccaatcccaagctcaatctcac
tccatcgctcaagcccatgcccaattccaggcccaattacaagcccaagcccaagcccaa
gcccaagcccaagcccaagcccaattgcatccacaagcccaatcaatctcgcttaaccaa
tcccaaatcccaaacccattgaatgcatcttcgccctctcttacgacccctaacaatgca
agtgcaaaacgtgggcagcaaaagccacctgctcggccgcctggaccccccctccccaac
aatgccgcttccctttataagagctccgagctaactcctgctgcccgaaggaagaagcgt
aagctgcctgagaagcagttgcctgatcgggtagctgcccttttgcccgaatcatctctg
tatacccaattactcgagctggagagccgtgtcgatgctgctctaactaggaagaaaatc
gatatacaagaagctcttaagacccctcctacccttcaaagaatgctacgcatatttatc
ttcaatacttatgccaaccaaactcgtggggcctcggaaaagcctgcacaagagccgcca
tcttggtgtcttcgcataattgggaggattttagacgatggtcctgaccaagaagcctca
ggggggctccccaaaccgaacccaaattacccgaaattctcatcgttttttaagaagatc
actgtggctttggatgccaatttataccctgagaacccaacaattgtatgggaaagcaat
cgctcgcctgcccctgttgaagggttcgatattaagaggaaaggggataaggaatttgtg
gcgaaactgaggcttgagatgaattgtgggcctgataagttcaagctgtcgcctgctctg
actgaggttcttggggttgaggtcgatacacgaccacgtatcatagctgctctttggcac
tacataaaagcgaggaagctgcaaaacccgagtgatcctacagtttttgcatgtgaccca
gctctccgtaaggtatttggtgacgaaaaaatgaagttttcaacggtttcacagaggata
tctgctcatttatccccaccccaagctatacaattggagcataaaattaggctttcaggg
attaacccagctggtaatatgtgctatgatgtgttggttgatgttccatttcctcttcag
aaggaaatgacaggtttcttggctggtactgacaaacaaaaagagatagaagcttgtgat
gaagcaatatgtgctgcgattaaaaagattcacgagcatcgtagaaggcgggccttcttt
ctaggctttagccagtctcctgtggagttcataaatgctttgattgcttcacaaagtagg
gatttgaagcttgtcgctggtgaggcgagccggaatgctgagaaggaacgtcgtgcagat
ttctataaccaaccttgggttgaagatgctgtcatcagttatttgaaccgcaagccagct
gctggaaatgatgctccaggaagcacataa
DBGET
integrated database retrieval system
