Aegilops tauschii (wheat D): 109767177
Help
Entry
109767177 CDS
T04345
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109767177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109767177
Enzymes [BR:
ats01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109767177
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109767177
mRNA degradation factors
3'-5' decay
Ski complex
109767177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
Ski2_N
MTR4-like_stalk
Helicase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
109767177
NCBI-ProteinID:
XP_020181535
LinkDB
All DBs
Position
Unknown
AA seq
1368 aa
AA seq
DB search
MDDLTPSPASEVPFRISFSGHGGHLRLDPTPNPPSPVPDFVLPPAYPPESPSSVKEYLEA
NYLNPELYVPTVANDGRVWDVDWFDLARPPLEPSAPRTMLVPAWEPPFRRRSSSSSEQQV
WDPESVQMEMSQVFDSGTGGMVPRMPGPAKDFVRGRVNSRPFRPGGLQDDAAEAAALEKA
FPEGARNGDWVRELMSGGPALNAPPGFPKGLDLGQLKEYNSHWKCFRDGEHVEEQPASSS
NDSTDKYSVQFDDLFKIAWDEDDANIVSHEDDGEQLAGDEGTNDVNERKVDKLQDASETL
TMADTDKQETNAREDISEAQTDLDKMLSSEVQDTRRETSGLVDDKPAQEGTDWALVVGDN
SIVANFHKLVPDMAIEYPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALAS
KHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEATCLIMTTEILRSMLYRGA
DIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFADWIGRTK
QKKIRVTSTNKRPVPLEHCLFYSGEVYKVCEKDIFLTQGFRDAKDAFKMKNANKFGAKPG
TKSGAPAVRAGTQGRNPDTSSKGRDQKHPKHHQTNSGAAAIQQSTSGSRRSESSFWMPLI
NNLLKKSLVPVVIFCFSKNRCDRSADSMFGADLTSSSDKSEIRVFCDKAFSRLKGSDRNL
PQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVF
DTLRKFDGKEHRRLLPGEYIQMAGRAGRRGLDTIGTVIMMCRDEIPEESDLKNLLVGKPT
RLESQFRLTYTMILHLLRVEELKVEDMLKRSFAEFHAQKDLPQKEKLLLQMLRQPTKTIE
CIKGEPSIEEYYDMFLEAEEHREFVTEAIMQLHTTQQFLAPGRLVVVKSKSDDDHLLGVI
VKNPSATLKQYVVLVLTGDCTSSALAPNLSSQSEKGPGDSQGYFIIPPKGKRGMDDDFFS
SSRTRKSSGVINIKLPYMGDASGMGFEVRAVENKEIISICISKIKIDQVGLLEDISKTVY
AKTVQMLIKEQTDGKYPPALDAIKDLKMKDMDQVKRYHAHNNLLEEMSKNKCHGCIKLKE
HKSMMKDQKMHKDELDQLKYQMSDEALQQMPQFQGRIDVLKEIHYIDSDLVVQLKGRVAC
EMNSGEELISTECLFENQLDELEPEEAVAIMSAFVFQQRNASEPSLTPKLADAKKRLYDT
AISLGQLQKRHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTI
VRLDETCREFRNAASIMGNSALYKKMEIASNAIKRDIVFAASLYVTGI
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctcaccccgtcgccggcgagcgaggtgccgttccgcatcagcttctccggc
cacggcggccacctccgcctcgaccctacccccaacccgcccagccccgtccccgacttc
gtcctgccgccggcctacccgcccgagagtcccagcagcgtgaaggagtacctcgaggcc
aattacctcaaccccgagctctacgtccccaccgtggccaatgacggcagggtgtgggat
gtggactggttcgacctcgccaggccgcctctggagccctctgccccccgcaccatgctc
gtccccgcctgggagccgccttttcgccgacgatcgtcgtcatcgtctgagcagcaagtt
tgggaccctgagtctgtgcagatggagatgagccaagtgttcgactcggggactgggggg
atggtgccacggatgccaggcccagcgaaggactttgtgagggggagagtcaacagccgg
ccgttccgcccggggggcctgcaggacgatgcggctgaggcggcagcattggagaaggca
ttcccagagggtgcccgaaatggcgattgggtgcgtgagcttatgagtggtggccctgca
ctaaacgctccaccagggttccccaagggattggacttgggccagttgaaggagtataac
agtcactggaagtgtttccgtgacggggagcatgtcgaggagcaacctgcatcttcatca
aatgactcgacggataagtactcggtgcagtttgatgatttgttcaagatagcctgggat
gaagatgatgccaacattgtgtcacatgaagatgatggtgagcaattggctggagatgag
ggtaccaatgatgtcaatgaacgaaaggttgataagttgcaagatgcttctgaaactctt
acaatggcagacactgacaaacaggaaactaatgccagagaagatatttctgaagctcaa
actgacttggataaaatgttatcatctgaagtgcaagatactcgcagagaaacaagtgga
ttagttgatgataagccagcacaggagggcacggattgggcactcgttgttggggataat
tctattgtggcgaacttccacaaacttgttccagatatggcaattgaatatccctttgaa
ttggataagttccagaaggaggctatatattatcttgagaagggggaatcagtctttgtg
gcagcccatacatcagcaggaaagacggttgttgcagagtatgcctttgctttagcatca
aaacattgcaccagggctgtctatactgctcccattaagactatcagcaaccagaaatac
cgagatttctgcgggaagtttgatgtgggacttcttactggagatgttagcatcagacca
gaggcaacttgcttaattatgacaacagaaatattgcgctcaatgctctacagaggtgct
gatattatacgggatattgaatgggtaatttttgatgaagtgcattatgtcaatgatgcc
gagagaggcgtagtttgggaggaagttattataatgctcccgaagcacattaacattgtc
ctcctttcagcaacggttccgaatacagttgaatttgctgactggattggccgaacaaaa
cagaagaaaattcgtgtcacatcgactaacaaaaggcctgttcccctcgagcattgcctg
ttctactctggagaggtatacaaagtatgtgagaaggatatatttcttactcaaggattt
agagacgccaaggacgctttcaaaatgaaaaatgcaaacaagtttggagcgaaacctgga
acaaaatcaggagctcctgcagtacgtgctggaactcaaggcagaaatccagacacgtct
agtaaagggagagatcagaagcacccaaagcaccaccaaaccaattcaggagcagcagca
attcagcaaagcacctcagggtcaaggagatctgagtcttcattctggatgccgcttata
aataaccttttgaagaaatcacttgtgcctgtggtaattttttgcttctcaaagaacagg
tgtgataggtcagcagatagcatgtttggtgctgatctcaccagtagttctgataaaagc
gaaatccgtgttttctgtgataaggccttttcgcgcctcaaaggatctgacaggaacctt
cctcaggtcgtaggaatacaaagccttctgcgaagaggaattggagttcaccatgctggg
cttcttcctattgtgaaagaagtagttgagatgctgttttgtcgcggtgtgatcaaggta
ctgttttccaccgagacatttgcaatgggtgttaatgctcctgcaagaacggttgtgttt
gatactttaaggaagtttgatggaaaggaacatcgaaggttacttccaggggagtatatt
caaatggctggacgagctggtaggagaggactagataccataggtacagtgataatgatg
tgccgtgatgaaattcctgaagaaagtgatttgaaaaatcttcttgttggaaaaccaact
cgactggaatctcagtttcgactaacatacactatgatactacatcttctacgtgtggag
gaacttaaggtggaggacatgcttaagagaagtttcgcagaattccatgcacagaaggat
ttgcctcagaaggaaaagctgcttctgcaaatgctacgtcaacctacaaagacaatcgag
tgcataaaaggggagccttctattgaagaatattacgatatgtttctagaagccgaagaa
cacagggaatttgtcacagaagcaattatgcagttgcacactactcagcagttccttgcg
cctggaagattggtggttgttaaatccaaatctgatgatgatcacttgcttggcgtaatc
gtgaaaaatccatccgctacactaaagcagtatgttgttcttgtactgaccggtgattgc
acttcatctgcactagcccctaatttatccagtcaaagtgagaaggggccaggggattct
caaggatattttattatcccgccgaaaggaaaacgtggcatggatgatgattttttctct
tcctctagaacacgaaaaagttcaggtgttatcaatataaagctaccatacatgggggac
gcatctggaatgggttttgaagtaagagctgtggagaataaagagattattagtatatgt
ataagcaaaataaagattgatcaagtcggactccttgaagacattagcaaaacagtttac
gctaaaacagttcaaatgcttattaaagagcagacagatggaaagtaccctcctgcgcta
gatgcaataaaagacctaaaaatgaaagacatggatcaagttaaaagatatcatgcacat
aacaacctactggaagaaatgtctaaaaacaagtgccatggttgtataaaattgaaggaa
cataagtcaatgatgaaggatcaaaagatgcacaaggatgagctggatcaactgaaatac
caaatgtcagatgaggcacttcagcagatgccacagtttcaaggcagaatagatgtacta
aaggagatccattacatcgattccgatcttgttgttcaacttaagggcagagtggcatgt
gaaatgaactctggtgaagagttaatatcaacagagtgtttatttgagaatcagttggat
gaattagaacccgaagaagctgtggctattatgtctgcatttgttttccaacaacggaac
gcgtcagaaccatctctcactccgaaactggctgatgccaaaaagaggctctatgacacg
gcaatcagcttgggacagctccaaaagaggcacgaggtgcctgtggatcctgaggagtat
gcacgtgataatctcaagtttggtcttgttgaggttgtctacgaatgggcaaagggaacg
cctttcgcggacatatgtgagctgacagatgtatctgaagggctgattgtaagaacaatt
gtgcggttggatgaaacatgtagggagttcaggaatgcggcttccataatgggcaactct
gctttgtacaagaaaatggagatcgcgtccaacgcaatcaagcgtgacattgtctttgca
gcaagtttgtatgtcacaggaatatga
DBGET
integrated database retrieval system
