Agrobacterium fabrum: Atu0052
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Entry
Atu0052 CDS
T00070
Symbol
hrpB
Name
(GenBank) helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
atu
Agrobacterium fabrum
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atu03019
]
Atu0052 (hrpB)
Enzymes [BR:
atu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Atu0052 (hrpB)
Messenger RNA biogenesis [BR:
atu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Atu0052 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
AAA_19
HA2_N
Flavi_DEAD
ResIII
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AAK85876
UniProt:
Q7D2A3
LinkDB
All DBs
Position
circular:complement(53592..56078)
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AA seq
828 aa
AA seq
DB search
MTRTPVPIKTELPELPVSAVLGDIAQVLAAKKRAVLSAPPGAGKTTLVPLRLLHEDWRGD
GKIILLEPRRLAARAAAGRMAELLRENVGETVGYRMRLDNRVSSKTRIEVVTEGVFARMV
LDDPELSGVSTVIFDEFHERSLDGDFGLALALDVQAGLREDLRILVMSATLDVERIGALM
GDAPVIQSLGRTFPIDIRYEERWQGIHVDEKVAKAITEAHASETGSILAFLPGQAEITRT
ASRLEGRFPDDTDIIPLYGNLSQKEQDAAIKPAPGGRRKIVLATSIAETSITIDGVRVVI
DSGLQRLPVFEPATGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHQGQTAALNAFT
PPQILASDLSGLALDLAHWGVHDPSALAFLDAPPEAALKESVALLKNLGALDNSGGLTRQ
GHLMRGLSLPPRLAAMVIASAEEGAGKKAAMLAVMLTEQGLGGNDIDLDERLRRFFSERS
ERAQAARKLASRLLDAIGDKTAKAETPSEVGALLLHAYPDRIALQRGARGRYVMANGRGA
ELAETERLAASKMLVVADITGRAAQPRVLAAAAIERADIEERMPHLIVQQEQLLFDKASG
QARARKVTRLGAIILDETPLPRPDGEQAARALANGVREFGLDILPFSKETLQLRDRIGFL
NASIGDPWPDVSDAALLARLEEWFVPFQNGARSLQDIRPGSLSEGILSLVPHEVARDLGR
LAPTHFEAPTGQRHPIRYDASEPTLSIRVQELFGLKAHPAIAQGRLPLLLELTSPAHRPI
QTTRDLPGFWTGSWKDVRADMRGRYPRHPWPEDPASALPTSRAKPRGT
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgaccagaacgcccgttcccataaagaccgaattgcccgaacttcccgtcagcgccgta
ttgggggatattgcccaggtgttggccgcaaagaagcgcgcagttctttcggctccgccg
ggggcgggcaagaccacgctcgtgccgcttcgtcttttacacgaggactggcggggcgac
ggcaagatcattcttcttgaaccacgccggctcgctgcccgggctgcggccggacgcatg
gccgagctgcttcgtgagaatgtcggggaaaccgtcggttatcgcatgcggctcgacaac
cgcgtctcctcgaaaaccaggatagaggtggtgaccgaaggtgtgtttgcccggatggtt
ctcgatgaccccgagctatcaggcgtttccacggtaattttcgacgaatttcatgagcgc
tcgctcgacggcgatttcgggctggcgctggcgctcgacgtacaggcggggttacgggag
gatctgcgcattctcgtgatgtccgccacgctcgatgtggagcgtatcggcgcgctgatg
ggcgacgcgccggtcattcagagccttggccggacgttcccgatcgacattcgatatgaa
gaacggtggcaaggtatccatgtcgatgaaaaagtcgccaaggcgattaccgaggcccac
gcatccgaaaccggttcgattctggccttcctgcccggccaggcggagatcacccgcaca
gcctcgcggctggagggacgttttcctgatgatacggacattatcccgctttacggcaac
ctgtcgcaaaaggagcaagatgccgcgatcaagccggcaccgggcggacggcgcaagatc
gtgcttgctacgtcaatcgccgagacatccattaccatcgatggcgtgcgggtggttatc
gacagcgggctgcagcgattgccggtctttgaaccggcgaccggaatcaccagattggag
accgtgcgggtgtcgcgggcttccgccgaccagagggccggccgcgccgggcgaacggaa
cccggcattgcgatccggctttggcatcaggggcaaacggcggcgctcaatgcctttacg
ccaccgcaaattctggcgagcgatctttccggtctcgccctcgatctcgcccactggggc
gttcacgacccttccgcgctcgcatttctcgatgcgccgcctgaagctgcactgaaagaa
tcggtggcgcttctcaaaaacctcggtgccctcgataacagcggcgggctgacgcgacag
ggccatctgatgcgtggcctttcattgccgccgcggcttgcggccatggtgattgcctcg
gcggaagaaggtgccgggaaaaaggcggcgatgctcgccgtcatgctgacggaacaggga
ctgggtggcaacgacatcgacctagatgaaaggctgcggcgctttttttccgagagaagt
gagagggcacaggcggcgcgcaagcttgcatcaaggctgctcgacgcgatcggcgacaag
accgcgaaggctgaaacgccgagcgaggtcggtgctctgttgctgcacgcctatccggac
aggattgcgcttcaacgcggcgcgcgggggcgttacgtgatggccaatgggcggggcgcg
gagctggccgagaccgaacggctggcggcaagcaaaatgctcgtcgtggccgatattacc
ggacgggcggcgcagccacgtgttcttgcggcggcggctatcgaaagggctgatatagaa
gagcggatgccgcatcttatcgtccagcaggaacagttgctgttcgacaaggcgagcggt
caggcgcgggcgcgaaaagtgacacgccttggtgccatcattctcgacgagacacccttg
cccagacccgatggcgaacaggcggcgcgggcacttgccaatggcgtcagggaattcggc
ctcgacattcttccattttcgaaagaaaccctgcagctgcgtgacaggatcggttttctg
aatgccagcatcggcgatccgtggcctgacgttagcgatgcggcgctgcttgcacggctg
gaggaatggttcgttcctttccagaacggcgcccgcagccttcaggacatccggcccggc
agcctctccgagggaatcctgtcgctggtgccgcatgaggtggcacgagatctcgggcgg
ctggcaccgacgcatttcgaagcgccgacgggtcagcggcaccccatccgttacgacgcc
agcgaaccgacgctttccattcgcgtacaggagcttttcggactgaaggcccaccccgcc
attgcgcaggggcgcctgccgctgctcctggaattgacctccccggcgcacaggccgata
cagacgacacgcgatcttcccggtttctggacgggctcgtggaaggatgtgcgggcggat
atgcgcgggcggtatccgcgccatccctggccggaggatccggcctcggccctgccgacc
agccgtgcgaaaccgcgcgggacgtga
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