Agrobacterium fabrum: Atu2089
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Entry
Atu2089 CDS
T00070
Symbol
ddlB
Name
(GenBank) D-alanylalanine synthetase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
atu
Agrobacterium fabrum
Pathway
atu00470
D-Amino acid metabolism
atu00550
Peptidoglycan biosynthesis
atu01100
Metabolic pathways
atu01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Atu2089 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Atu2089 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Atu2089 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
atu01011
]
Atu2089 (ddlB)
Enzymes [BR:
atu01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
Atu2089 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
atu01011
]
Precursor biosynthesis
Amino acid ligase
Atu2089 (ddlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_4
GARS_A
ATP-grasp_3
RimK
CPSase_L_D2
Motif
Other DBs
NCBI-ProteinID:
AAK87839
UniProt:
Q8UDN3
LinkDB
All DBs
Position
circular:complement(2051211..2052137)
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AA seq
308 aa
AA seq
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MGGKHVAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDELRPDVAF
NALHGPFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNR
FDFTSEHPLQPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGR
ELTCGVLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAGISPKIYQKIQTLAVMAH
QAIGCRGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWM
VEDASCLR
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcaagcacgtagctgttcttttgggtggattttcgtcggagcggccggtcagt
ctctcgtcgggcaacgcctgcgcgcttgcgctcgaaggcgaaggctacaaggtcacccgt
gttgatgtggggcgcgatgtcgccgccgtactcgatgagctgcgcccggatgtcgccttc
aacgccctgcatggccccttcggcgaggacggcaccattcagggtatcctcgaatatctg
gccattccctatacacattccggcgtgctggcgtccgcccttgccatggataaggcgcag
gccaagaaggttgccgccgccgctggcatcccggttgctggcgagcgcgtcatgaaccgc
ttcgatttcaccagcgaacatccgctgcagccgccctatgtggtgaagccggtgcgcgaa
ggttcgagcttcggggtcgtcatcgtcaaggaagaccagtcgcatccgccgcagattctc
acctcgtcggaatggcctttcggcaaccaggtgatggtcgagcgctacattcatgggcgc
gaactgacctgtggcgtgctcgacggcgaggcgctgggcgtcaccgaagtggtgccgctg
ggtcacaatttctatgattatgatgcgaaatacgctgctggtggctcgaaacatgtcatt
cccgcaggaatttcaccgaaaatttaccaaaagattcaaacattggcggttatggcgcat
caggcgatcgggtgccgtggcgtaagccgttcagactttcgttacgacgaccgcttctca
gaagatggcgaagttatctggcttgaagtgaatacgcagccgggcatgacgccgacctcc
ctggtgccggaaatggcggcccatgctggccgctcctttggtgaccttgtcagctggatg
gtggaggacgcttcgtgtttgcggtga
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