Agrobacterium fabrum: Atu4632
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Entry
Atu4632 CDS
T00070
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Atu4632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu4632
Enzymes [BR:
atu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Atu4632
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Atu4632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Ripply
Motif
Other DBs
NCBI-ProteinID:
AAK88815
UniProt:
A9CGX3
LinkDB
All DBs
Position
linear:1781477..1783792
Genome browser
AA seq
771 aa
AA seq
DB search
MGLQTYNAKRSFDKTPEPKGTKAEKPGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGIWQPIGDAGKGYRKGH
LEFELEGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHKGGADILEERPESVKTGR
SVEEVAKKPEDTWNSKPVSKKAGASTSGQKQAHALPKGARKQALPSFVPPALATLKPKPP
EGSRWLHEIKFDGYRLQARVDQGKLQLLTRSGLDWTEKFGAAVAAALTALPAETVLIDGE
IVVERDSGASDFSALQQDLSEGRDDRFVFYAFDLLYLDGSDLRGAALSERKALLEKLLPA
GDPHLRYSQHFEESGALVLDHACRLSLEGVISKVKSSKYVSGRKGEWVKSKCSMRQEFVI
GGYTVSSTSEHAIGSLALGVYENGKLRHVGRVGTGYSGDVAEMIFSRLKPLERKDSPFGD
KLTALARRDLHFVKPELVAEVEFRAWSGDGNLRHASFRGLREDKPAGEIEREEKAVSDSN
APQSQSKIKFTHPDRLYWPNDGVTKEGLADYYAQVWRHMAPFVVNRPLALLRCPEGIEGQ
RFFQKHAWRGINKAIEQIKDPKDKGGEPLIRITDFDGLMALVQSAALEIHPWGATTANWE
KPDMITMDIDPGEDVAWDAVIEAAQELKRRFEEAGLAAFVKTSGGKGLHVVSPLKPQAGW
APVKAFAKAMATDMSKAEPEKYLSVATKAKRQGRIFIDYLRNGRGNTAKRK
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgggattgcagacttataacgccaagcgcagtttcgacaagacgccggagcccaaaggc
acaaaggctgaaaaaccgggatcgagtttcgtcatccagaaacacgatgcccgccgcctg
cattacgattttcgccttgaaatggacggggtgctgaaaagctgggcggtgacgcgcggc
ccgagcctcgatccggaagacaagcgccttgccgtgcatgtggaggaccatccactgagc
tacggcgatttcgaaggcgtcatccccaagggacaatatggcggcggcactgtgatcgtc
tgggatcgcggcatctggcagccgattggtgatgccgggaaaggatatcgaaagggccat
ctggagttcgagctcgagggagagaagctgaaaggccgctggcatctggtgcgcatgcac
ggcaagcccggagagagccgggagaactggctgctgatcaagggtgacgatgaggaggcg
aggcacaaaggcggtgctgatattctcgaggaaaggccggaatcggtaaagaccggccgc
agtgtcgaggaggtcgcaaaaaaaccggaggatacctggaattccaagccggtctcgaaa
aaggccggcgcctcgacatccggccagaaacaggcgcatgcgctgcccaaaggagcacgc
aaacaggccttgccctctttcgtgccgccggcactcgccacgctgaagccaaaaccgccg
gagggatcacgctggctgcacgaaatcaaattcgatggttaccggctgcaggcgcgagtc
gatcagggcaaacttcagctgttgacccgcagcgggctggactggacggaaaaattcggc
gccgccgtggcggctgcactcacggcgctgccggcggaaactgttctgatcgacggtgaa
atcgttgtcgaacgcgatagcggcgcttccgatttctctgccttgcagcaggacctgagc
gaaggacgcgacgaccggtttgtcttttatgcgtttgaccttctttatctcgatgggagc
gacctgcgcggcgcggcgttgagcgaacgaaaggcactgctggagaagctgttaccggcc
ggcgatccccatctccgctacagccaacatttcgaggaaagtggcgcgctggtgttggac
catgcctgccggctcagcctcgaaggcgtgatttccaaggtcaaaagcagcaaatatgtg
tccggccgcaagggcgaatgggtaaagtccaaatgttcgatgcgacaggaattcgtgatc
ggaggttacaccgtctcttcgacgtcggagcatgccatcggctcgctggctctaggggtc
tatgaaaacggcaagctgcgccatgtcggccgtgtcggaaccggttattccggcgacgtc
gcggagatgatattttctcgtctgaagccgctggaacgcaaggacagcccctttggcgac
aagctgaccgcgcttgcccgccgcgatctccattttgtgaagccggaactggtggcggag
gtggagtttcgcgcttggtcaggagatggaaatctgcgtcatgcatccttccggggtttg
cgggaagacaagccggcaggagagatcgaacgcgaggagaaggccgtgtcggatagcaat
gcgccgcagtcgcagtcgaagatcaagttcactcaccccgaccggctttactggccaaat
gacggcgtgaccaaggagggactggccgactattatgcgcaggtctggcggcatatggcg
ccctttgtcgtcaaccggccgctggcgctgttgcgttgccccgagggcatagagggccaa
cggtttttccagaaacacgcctggcgcggcatcaacaaagcgatcgagcagatcaaggat
cccaaggacaaggggggcgaaccgctgatccgcatcacggatttcgatggcctgatggcg
ctcgtgcaatccgcagcacttgaaatccacccatggggcgcaacgaccgccaattgggaa
aagcctgacatgatcaccatggatatcgaccccggcgaggatgtggcctgggacgcggtg
atcgaggcggcgcaagaactcaaacggcgcttcgaagaggcgggccttgccgctttcgtc
aagacgtcgggcggcaaggggctgcatgtggtctcgccgctgaaaccgcaggcgggctgg
gcgcccgtcaaggccttcgccaaagccatggccacggatatgtcgaaggccgagccggag
aaatatctctccgtcgccaccaaggccaagcgtcagggtcgcatcttcatcgattatctg
cgcaatggccggggcaatacggcgaagcggaaataa
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