Agrobacterium fabrum: Atu5051
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Entry
Atu5051 CDS
T00070
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Atu5051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu5051
Enzymes [BR:
atu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Atu5051
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Atu5051
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AAK90426
UniProt:
A9CLR5
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All DBs
Position
At:50108..51145
Genome browser
AA seq
345 aa
AA seq
DB search
MRRRAKPLLQDDSLSTKSQPLRKRDPAQPNLPFDPMPDRVEPCLAMLKPVPPTGPDWAYE
IKWDGYRLAVHIEPKGVRIITRGGHDWTHRFPTIAAAAKRLGIGTAILDGEAVVLNSEGR
SDFGALQRSLGGRGGKRASSESILFAFDLLYFDGHDLTKTELSVRRHLLTDLLDGAVGAI
QLSEEVAGEGAELLENARSLGLEGIIAKHRDSPYRPGRTGDWLKIKCIQSESFMIVGYEQ
SAAARGGVGSLLLAARRDHDWVYVGAVGTGFKEKDAAYLKKTLDTLKTRTPVVPLKGKNY
VFAQPTLIAEIEFRGWTDDGNLRHASYKGLREIQDNAAVFELEWS
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgagacgacgcgccaaaccgctgctacaggacgacagtctttccaccaaatcgcagccg
cttcgcaagcgcgacccggcgcagccgaaccttccattcgatccgatgcccgatcgggtc
gagccatgccttgccatgctgaaacctgttccaccgaccggccctgactgggcgtatgag
atcaagtgggacggatatcggctggcggtgcacatcgagcctaaaggtgtgcggattatc
acccgcggcggccatgactggacacatcggtttcccacgattgcggcagcagccaaacgg
ctggggataggaactgctattctggatggcgaagctgttgtgctgaatagcgagggtcgc
tccgacttcggagcgctgcagcgctcgctcggcggacgcggcggcaaacgagcatcgagc
gaatccattctgttcgccttcgacctgttatactttgacgggcacgatctgacgaagacc
gagctgtccgtccgccgacatctcctgacagacttgttggatggtgcagttggagcgatc
cagctgtccgaggaggtggcaggagagggcgccgaactcctggaaaacgcccgctcgctt
gggttggaaggcatcatagccaaacaccgggacagtccgtaccgacccggccgcaccggc
gactggctgaagatcaaatgcattcagagcgagagcttcatgatcgtcggctatgagcag
tctgccgccgcgcgaggcggggtcggtagcctgctgctggcggctcgccgcgaccacgac
tgggtctatgtcggggccgttggaaccgggttcaaggaaaaggatgcagcctatctgaag
aagacgctcgacacgttgaagaccaggacaccggtcgtgccgctgaagggtaagaactac
gtcttcgcccagccgacgctgattgccgagatcgaattccgtggctggaccgacgacggc
aatctgaggcatgcatcttacaaagggctacgtgagattcaggacaatgctgcagtcttt
gagctcgaatggagttga
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