Agrobacterium fabrum: Atu6090
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Entry
Atu6090 CDS
T00070
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Atu6090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu6090
Enzymes [BR:
atu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Atu6090
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Atu6090
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Totivirus_coat
Motif
Other DBs
NCBI-ProteinID:
AAK91050
UniProt:
A9CKW9
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Position
Ti:complement(107937..108998)
Genome browser
AA seq
353 aa
AA seq
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MTRPPRSKPLLRDTEPPIRSKPRRKRNPAQPQLLFDPIPDRVEPALALLKAKPPTGNEWS
WELKWDGYRLAVHIEPQRIRILTRGGHDWTHRFPAIEQAARALGPATMIIDGEAVVLDDE
GRPDFGLLQQSLGASGKQAGRRASHAVLYAFDLVYLDGHDLRGVEYRSRRHLLEDTINGP
TNEASAIRISETLDAEPAVLLEHVCRLGLEGIVGKRLDQPYRSGRTGDWVKVKCIQSEAF
FIVGYERSASYPAGFGSLALAAYRDGDLVHVGSVGTGFKGAEIIRLRKILDTLRWKRKQP
PLPHSGTADIVWVQPTLIAEIEFRAWTSDGKLRHPSYKGLRERQDNADVYQLD
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgacgaggcctccgagatcaaaacccctcctgcgcgacaccgagccgccgatccgctca
aagcctcgcaggaagcgtaatccagctcaaccacagctcctcttcgatcccatacctgat
cgcgtcgagccggcgctggccctattgaaggctaagcctcccaccggaaacgaatggagt
tgggagctgaaatgggatggctatcgccttgcggtccatatcgagccccagcggatccgg
atccttacccgcggcggccacgactggacacatcggtttccggccatagagcaggccgcc
agagcgctggggccggcgacgatgatcatcgatggggaagccgtcgtgctcgacgatgag
gggcggccggatttcgggctgctgcagcaatcgctgggtgcatccggcaaacaagctggc
aggcgcgcctcccacgccgttctttacgctttcgatcttgtttatctggatgggcacgat
ctgcgcggtgttgaataccgttcgcgccgacaccttctcgaggacacgataaacggccca
acgaatgaagccagcgccattcggatatcagaaacactcgatgccgagccagctgtcctg
cttgagcatgtctgccgcctcggcctggaaggcatcgtcggcaagcgcctcgatcagccc
tatcgttcgggccggaccggggattgggtaaaagtcaaatgcatccagagcgaggctttc
ttcatcgtcggctatgagaggtccgcatcgtacccagccggcttcggctcgttagcgctt
gccgcctaccgcgatggcgatctcgtccacgtcggaagcgtcggcacgggcttcaaggga
gccgagatcatccggttgcggaagatactggacacgctgcgatggaagcgaaagcagccg
cccctgccccattccggaactgccgacattgtctgggtccagcctaccctgatcgccgag
atcgagtttcgcgcctggacatcggacgggaaactccgtcatccgtcgtacaagggcctg
cgggaacggcaagacaatgccgacgtttaccagctcgactag
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