Actinotignum urinale: CJ184_007150
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Entry
CJ184_007150 CDS
T09101
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
auu
Actinotignum urinale
Pathway
auu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
auu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ184_007150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
auu03019
]
CJ184_007150
03009 Ribosome biogenesis [BR:
auu03009
]
CJ184_007150
Enzymes [BR:
auu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJ184_007150
Messenger RNA biogenesis [BR:
auu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJ184_007150
Ribosome biogenesis [BR:
auu03009
]
Prokaryotic type
rRNA helicases
CJ184_007150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WIK59001
LinkDB
All DBs
Position
1684506..1686701
Genome browser
AA seq
731 aa
AA seq
DB search
MSESSGVQTPKNENIFSNASLPTDSSEAEVTQENTSQASSSEPDVTSETTPSEHKATAHA
LEEEVTFAELGLPDQLLQAVTDMGYETPSPIQEKTIPYLLEGRDVVGVAQTGTGKTAAFG
LPLLTHIDPSNTNVQALVLAPTRELAMQSAEAIQSFATQTRVDVLAVYGGSPYGPQLRAL
EQGVQVVVGTPGRIMDLIDRGALDLHNVTYFVLDEADEMLRMGFAEDVEKIASDLPEERI
SALFSATMPPFIRKVAQSHMKDPVEISITPQASTVDTVTQEYAVVPSRRKIGALARVLAV
SDAEAAIVFVRTRATAEDLAIELGARGVATAALSGDVPQKDRERLVARLKDGTLDVLVAT
DVAARGLDVERIGLVVNFDVPRESDTYVHRIGRTGRAGREGRSLTFVTPKEISRLRRIAR
VTKSDMKEIDLPTPAEVSKLRAEKLVDQARARFELGRLDVYRAVLARFLEENRAAVKPHV
TLTLDSVLAHDAESDAESETSEKTEGTEENTSVSSHNDDEFRVDALTTTDAEHSHGVEKP
RTPMTVEELLLALLALGVRDPGPSGDTPDPIVDEDSSETVKNARRAKGRQTSIPGATRYR
IEVGHKDRVKPGAIVGALTGEGGLRGSDLGHIDIFPTFSLVEIGVPLSPEARRRISEAEV
SGRALRISEDRGPGGSAAVAATSRRSGFRGGKGKSSGRGTKLGRKHGGSSAGGRGAHGKD
KGRGGKRGWRK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatcttcaggtgtacagacacccaaaaacgaaaatattttttccaacgcctca
ctaccaacggattcttccgaagccgaggtcactcaagaaaatacttcccaggccagctca
tccgaacctgatgttacatccgaaacgactccgagcgaacacaaggcaacagcacacgcc
ttagaagaagaggtcacttttgccgaactcggcctacctgaccagctcctccaagccgtc
accgacatgggctacgaaacccccagtccaatccaggaaaaaactatcccgtacctcctt
gagggacgcgatgttgttggggttgcacaaaccggcaccggaaaaaccgcggcttttggt
ctaccacttttgacacatattgacccatccaacacaaacgtccaggctctcgttctggcg
ccaacacgcgaattagcgatgcaaagcgcggaagctatccaatcttttgccacccaaaca
cgtgttgacgtgcttgccgtgtacggcggatccccctacgggccacagttgcgtgccctc
gaacaaggggtgcaggttgttgtgggaacacctgggcgcattatggaccttattgaccgt
ggcgccttggatttgcacaacgtcacctattttgttctcgacgaagccgacgaaatgttg
cgtatgggatttgccgaggacgttgagaaaattgcctccgatcttcccgaggaacgcatt
tccgcactcttctccgcaaccatgcctccgtttatccgcaaggttgcccaatcacacatg
aaagaccctgtggaaatttctattacaccgcaggcctccaccgttgataccgtcacacaa
gaatacgcggtggttccctcacgccgtaaaatcggcgctctcgcgcgcgttcttgccgta
agcgacgccgaagccgcaatcgtttttgttcgcacacgcgcaacagcggaagatttagct
atcgagcttggcgctcgcggtgtggcaacagcagcactctccggggacgttccccaaaag
gatcgtgaacgtctggttgcgcgcttgaaggatggaaccctggatgttcttgtggcaacc
gatgtggcggcgcgcggtttggatgttgaacgcattgggctcgtcgtcaattttgatgtg
ccacgcgaatccgatacctatgttcatcgtattgggcgaacgggacgagccgggcgcgaa
gggcgttcgctgacgtttgttactccgaaggaaatttcgcgtctgcgcaggattgctcgt
gtcacgaagtccgacatgaaagaaattgatttgcccaccccggctgaggtttccaaactt
cgcgccgagaaactggtggatcaggctcgtgcgcgtttcgaacttgggcgtctcgatgtg
tatcgtgctgttcttgcacgttttcttgaggagaatcgcgctgctgtaaaacctcacgtc
acgttgacgctcgatagcgtacttgcacacgatgcggaatccgatgccgaatctgaaact
tccgaaaaaaccgagggaaccgaagaaaacacaagtgtttcttcacataacgacgacgaa
ttccgcgtcgatgccctcaccacaacggatgcggaacatagtcacggggttgaaaaaccg
cgtacacccatgactgttgaggaactccttcttgcgctcctcgccttgggggtacgcgat
ccagggccgagcggggacactcccgatccgattgttgatgaagattcttctgagacggtg
aaaaatgcgcgtcgagcaaagggcaggcagacttcaattcctggggctacacgttaccgt
attgaggttgggcataaggaccgcgtaaaaccgggcgccattgttggtgcgttgacgggc
gaaggtgggctacggggctccgatttggggcatattgatattttcccgaccttctctctc
gtggaaatcggggtgccactctcccctgaagcaaggcgccgaatttcggaagctgaagtt
tccgggcgtgccttgcgtattagtgaagatcgcgggccgggaggtagcgcagccgttgcc
gccactagccgacgtagtggcttccgaggcggtaaaggtaaatcttctgggcgcggaact
aaattaggccgcaagcatggcggaagttccgccggcgggcgtggcgctcacggaaaagat
aaaggtcgtggaggtaagcgcggctggcgcaagtag
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