Trichormus variabilis: Ava_4689
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Entry
Ava_4689 CDS
T00277
Name
(GenBank) condensin subunit Smc
KO
K03529
chromosome segregation protein
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ava03036
]
Ava_4689
Chromosome and associated proteins [BR:
ava03036
]
Prokaryotic type
Chromosome partitioning proteins
Condensin-like complex
Ava_4689
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_29
AAA_15
Crescentin
Motif
Other DBs
NCBI-ProteinID:
ABA24286
CyanoBase:
Ava_4689
UniProt:
Q3M400
LinkDB
All DBs
Position
complement(5851726..5855352)
Genome browser
AA seq
1208 aa
AA seq
DB search
MVHIKRVELTNFKSFGGTTSVPLLSGFTVVSGPNGSGKSNILDALLFCLGLASSKGMRAD
RLPDLVNNTQTAKSRSAVEAVVTVTFDLSDLVDASDQFSSVSGDEELSQDEAPSVNGNGH
RATEWSVTRKLRVTHQGSYTSNYYINGVAATQTELHEELERLRIYPEGYNVVLQGDVTSI
ISMKGKERREIIDELAGVAAFDRKIHQAKGTLDEVKDKEDSCRIIESELTLQRDRLSQDR
AKAERYQKLRTEFLEKQCWEAVLSWRSLQAQQEKLVTDIQAGDRHYGELTTHLASLNTEI
SQKTAELEQLNAHVKAMGEEELLAVQSTLATQEAERKQLQRQQTELETALQETTKRLTQT
QQDIQQHQQGLGELAQAQDLERQSIVYCQQQRDEAQQALEKSREAAAEIASASEAWVQQQ
TALNRQIEAVLQTLEPQRTEQAQLRERNHQLQQLIGEQTELIANLEPQLAEKQADCERIE
TEFNSSSEPIQDLAQNLAATEQELQIQQDTQKRLLQEQRDKQRQLDRIEAQAQAQQEVQG
TQASKVIIQSGMPGVCGLVVHLGRVEPKFQLALEIAAGARLGHIVVEDDGIAAAGIELLK
QKRAGRATFLPLNKIQAHKFTQDATLRLANGFINYAVNLVDCDRRYKDIFNYVFGNTVVF
ANLEAARKNLGLYRIVTLDGELLETSGAMTGGSSNQRSSLRFGNTEAAESDEAIGLKQRL
ADIDRILNRCGDAIANLSIKTKQLSQELTETRQARREQQLQLEQLQKDIKTLTAQLAGTR
SQLTQNTEKFTTAQSRLEILDRELPGQESQLQQLRHTLAELEASQTPSEWQQIQATIKTQ
EQQIQQRETAFREAEQRLKNLENQQQRLQERIQEAQQRITEYQTQQTTSTEAIHRVSQQT
TTINAQITQTRAKLSELEQHLGVEKQKRDTIEQEVRSHLLRQQQLEWEIQKLEETQLKRR
EDVTALQSQLQELIPELPNPLPEVPDKVDLEELQKELRSLSKRLQAMEPVNMLALEEYER
TQKRLEELTQKLETLEAERTELLLRIENFTTLRQIAFKEAFDAVNENFQSIFATLSDGDG
YLQLDNPEDPFNSGLNLVAHPKGKPVQRLASMSGGEKSLTALSFIFALQRYRPSPFYAFD
EVDMFLDGANVERLSRMIKQQAQQAQFIVVSLRRPMIESAERTIGVTQARGAYTQVLGIK
LSSSNTSA
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggtgcatattaagcgcgtagaacttaccaatttcaaatccttcggcggtacgacctct
gtcccattgctgtcggggttcactgtcgtatctgggcctaatggttcgggtaagtctaat
attttggatgcgctgttgttttgtttgggactggctagttctaaggggatgcgagcagac
cgcttacccgatttggttaataatactcaaacggcgaaaagtcgctcggcggtggaagct
gtggtgacggtgacatttgatttatctgatttggtggatgcgagtgatcaattttcatct
gtcagtggtgatgaagaattatcccaggatgaagcgcctagtgtaaatgggaatggtcac
agagccacagaatggagtgtaactcggaaactgcgggtgacccatcagggtagttatacc
tcgaattactacatcaatggggttgcggcgacgcagacagagttacatgaggagttggag
aggctgcggatttaccctgaaggttataacgtggtgttgcaaggggatgtcaccagcatt
atttccatgaaggggaaggaacggcgggaaattattgatgagttggcgggggtggcggcc
tttgataggaagattcaccaagccaagggaactttggatgaggtgaaggataaggaagat
agttgtcggattattgagtctgagttaactttacaacgcgatcgcctttcccaagaccga
gcgaaggcggagaggtatcaaaagttacgcacggagtttttagaaaagcaatgttgggaa
gcggtattatcttggcgttccctacaagcacaacaagagaagttagttacagatattcaa
gcaggcgatcgccattatggggaactgacaactcatctggcaagcttaaatacggaaatt
tctcaaaaaacggctgaattggaacagctaaatgctcatgtgaaagcaatgggggaagag
gaactgctggcggtacaatctaccctagctacccaagaagcggaacgaaagcaactccag
cgtcagcaaacggagttagaaacggctttgcaagaaactaccaaacgtttgacgcaaact
cagcaagatatccaacaacatcagcaaggtttgggtgaactggcgcaagcacaggattta
gaaagacaatcgattgtttattgtcagcagcaacgggatgaagcacaacaagctttggaa
aagtcccgtgaagccgcagcagaaatcgcctcagcctcggaagcctgggtacaacaacaa
acggcgttaaaccggcaaattgaggctgtgttgcaaactctggaaccgcaacgtacagaa
caggcgcaactgcgggaacggaatcaccagttacagcagttaattggggagcaaacagag
ttaattgctaatttggaaccgcaattggcggagaaacaagctgattgtgaacgcatagaa
acagaatttaactcttctagtgaacccatccaagatttagcccaaaatcttgcagccaca
gaacaggaattacaaatccagcaagatacccaaaagcggctattgcaagaacaacgagac
aaacaacgtcagctagatagaattgaggcgcaagcacaagcacagcaagaggtacaagga
actcaagccagtaaggtgattatccagtcaggaatgcctggggtgtgcggcttggtggta
catttgggacgggtagaacccaagtttcaattagcgttagaaattgcggctggggcgcgg
ctgggacacattgtggtggaagatgatggtatagcagccgccgggattgaactactcaaa
caaaaacgggctgggagagcaacgtttttaccgttaaataaaattcaggctcacaaattt
acccaggatgcaacgctgcgtttagctaatggtttcattaactatgccgtgaatttggta
gactgcgatcgccgttataaagacatcttcaattacgtctttggtaatacagtagtcttc
gccaacttggaagcagcgcggaaaaatctcggcttatatcgcatcgtcaccttggatggg
gaactactagaaaccagtggcgcgatgactgggggaagtagtaaccagcgttcctcccta
cggtttggtaacaccgaagccgcagaatcagatgaagccattggtttaaaacagcgttta
gccgatattgatcggattttaaaccgttgtggtgatgcgatcgctaatttatccatcaaa
accaaacaactatcccaagaactcaccgaaacccgacaagcaaggcgagaacagcagtta
cagctggaacagttacaaaaagatattaaaactttaacagcccaattagcagggacgcga
tcgcaactcacccaaaacaccgaaaaatttaccacagcccaatctcgtctggaaattctg
gatagggagttaccaggacaagaaagccaattacaacaactacgccataccctagccgag
ttagaagcctcccaaacccccagcgaatggcaacaaattcaggcgacaattaaaacccaa
gaacaacaaatacaacaacgggaaaccgcctttagggaagccgaacaacgcctaaaaaat
ctggaaaatcaacaacagcgtttacaagaacgcatccaagaagcccaacaacgcatcacc
gaatatcaaacccaacaaaccacttctacagaagcgattcatcgcgtctcccaacaaacc
acaaccataaacgcacaaatcacccaaacccgcgccaaactcagcgaactagaacaacac
ctgggcgtagaaaaacaaaaacgcgacacaattgaacaagaagtgcggtcgcatctccta
cgtcagcaacaattagaatgggaaatccaaaagctggaagaaacccaactcaaacgccgg
gaagacgtaaccgccttacaaagccagttacaggaactaatcccagaactgcccaaccct
ttgccagaagtcccagacaaggtagacttagaagaattgcagaaagaattgcgatcgctc
tccaaacgtctccaagcaatggaacctgtgaatatgctggcgttggaagaatacgaacgc
acccaaaagcgtctagaagaactcacacaaaaattagagaccctagaagcagaacgcacc
gaattactcctccgcattgaaaacttcaccaccttgcgccaaatcgcctttaaagaagcc
ttcgacgctgtaaatgaaaatttccaatccatcttcgccaccctgtctgacggcgacggc
tacctgcaattagataacccagaagacccctttaacagtggcttgaacttagtcgcccac
cccaaaggaaaaccagtccaaagactcgcctccatgtccggtggtgaaaaatccctcacc
gccttaagctttatctttgccctgcaacgctatcgcccctcacccttttacgcctttgat
gaagtagatatgttcctcgatggggcaaacgtagaacgattgtcaagaatgattaaacaa
caagcccaacaggcacagttcatagttgtgagtttgcgccgtccgatgatagaatcagcc
gaacgcacaatcggcgttactcaagcacgaggagcttatactcaagttttgggaattaag
ttatcatcctcgaatacatctgcttga
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