Archaeoglobus veneficus: Arcve_0209
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Entry
Arcve_0209 CDS
T01451
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ave
Archaeoglobus veneficus
Pathway
ave03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Arcve_0209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ave03400
]
Arcve_0209
Enzymes [BR:
ave01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Arcve_0209
DNA repair and recombination proteins [BR:
ave03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Arcve_0209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
mRNA_cap_enzyme
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AEA46246
UniProt:
F2KNL8
LinkDB
All DBs
Position
185551..186525
Genome browser
AA seq
324 aa
AA seq
DB search
MEDWFNRKIKPMLAVRGKPFSSDDYIYEIKWDGTRCIAFVDVGKKRLRLQNRRLIEIAYR
YPELDFFDFESQNAVLDGEIVVFHNGKPSFPLLQQRDHVDSRLKIEILSKRIPAVYIAFD
VLYTASDGWIMNLPLVERKKILDELAEEARRVTKSEFIEGAGVEFYRKAIEMGLEGVMAK
RKNSTYQPGKRSAAWVKMKKRKTLDCIIVGWLEGEGVREGKFGSLVLALKSGDKLVHVGQ
VGTGFESDFIDWFYEKLKEIEISKPWFEAEFKRRVHWVKPVYVCEVEFLEVTEDGKLRAP
VFLRLRDDKGPDECTVEGLYGLVD
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggaagactggttcaacagaaaaatcaagccaatgctggcagtcagaggcaaacctttc
agcagtgacgactatatatatgagataaagtgggacgggacgcgctgcatagctttcgtt
gatgttgggaaaaagagacttagattgcaaaacagaaggctgattgagatagcgtatcgc
taccccgagcttgacttcttcgattttgagtcgcagaacgccgtgctcgatggagaaata
gtcgttttccataatggaaagccgtcgttcccccttttgcagcagagagatcacgttgac
agcaggctaaagattgaaatcctctcgaaaaggattcccgccgtttacatagccttcgac
gtgctttatacggcaagcgacgggtggataatgaatttaccattagtggaaaggaagaaa
attctcgacgaattggcggaagaggcaaggagggttacgaaatctgagtttatagaaggg
gcgggagtagaattttacagaaaggcaattgaaatgggactcgaaggcgtgatggccaag
cgtaaaaacagcacgtaccagccgggaaagaggagcgccgcatgggtcaagatgaagaag
cgaaagaccctcgactgtataatcgtcggctggctggagggcgagggggttagagaaggg
aagttcggttcccttgttttagccctgaaatcaggggataaactcgtccacgttggtcag
gttggcacaggcttcgagtccgacttcatagactggttctacgagaagctgaaggagatt
gaaattagcaagccatggttcgaagcagaattcaagcgaagagtgcactgggttaagcct
gtgtatgtctgtgaggtcgagtttctcgaagttactgaagacggaaagttaagggctcct
gtctttctgagactcagggatgataaggggccggatgagtgtaccgttgaggggctttat
ggcttggttgactga
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