Allorhizobium ampelinum: Avi_8017
Help
Entry
Avi_8017 CDS
T00851
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
avi
Allorhizobium ampelinum
Pathway
avi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Avi_8017 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avi03400
]
Avi_8017 (ligD)
Enzymes [BR:
avi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Avi_8017 (ligD)
DNA repair and recombination proteins [BR:
avi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Avi_8017 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACM39557
UniProt:
B9K4A7
LinkDB
All DBs
Position
pTiS4:complement(15594..18275)
Genome browser
AA seq
893 aa
AA seq
DB search
MPDNLSKYREKRDFKKTAEPSGEVGVKSSNRRRFVIQKHDATRLHYDLRIEMDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKTAEQ
ALAKGDFKFTLEGERLHGSFVLVRMRGREGEKRTNWLLIKHHDDHAVEENGAAILEENDT
SVASGRTMEAIASGKGRKPKPFMTQGSVVEADAVWDSTEGLAADERKAGTKTKAKPTKKA
AAAAKQPNTGMPEFVPPQLCETFSRPPSAEGWIHEVKFDGYRIQMRVVDGNVTLKTRKGL
DWTAKWPAIAKAASSLPDCIIDGEICALDNHGAPDFAALQAALSEEKTDDLVFFGFDLLF
EGEEDLREAPLTERKERLSAMLSDAGDDPRLRFVEHFETGGDAVLKSACRLSLEGIVSKK
GDAPYQSGRSDTWTKSKCRAGHEVVIGAYATTNGAFRSLLVGVYRGDHFVYVGRVGTGYG
AKVVDQILPKLQALEASKSPFTGIGAPKKAAEIVWLKPELVAEIEFAGWTADGQVRQAAF
KGLREDKPAKEVEAEKPAEPAEVDTPDPETARKPAPTPTTSSRLRKGAKVDVMGVLVSSP
DKELWPDALDGEPVTKVDLAHYYEAVGPWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMQ
GTSNLIEQVKVSGDKQPYLQIGRVEGLAAIAQIGGAELHPWNCEPYQPEVPGRLVFDLDP
GPDVDFATVVEGAREIRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWDEGKAFA
HDVCLQMARDNPELYLTKMSKAQREGRIFLDYLRNDRTSTAVAPLSPRARPGATVSMPLN
WAQVKKGLDPKRFTIRTVPGLLKDNTAWQDYCDGQRPLEQAIKRLEKLMRRAA
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgcccgataatctctcgaaataccgcgagaaacgcgacttcaagaaaaccgccgagccc
agcggtgaagtcggggtgaagtcatcgaaccgccgtcgcttcgtcatccagaagcacgac
gctacacggctccattacgatcttcggatcgagatggatggtgttttcaaatcctgggcg
gtcaccaaaggtccatcactcgatccacatgacaagagattggcggtcgaggtcgaagat
cacccgctcgactatggcgacttcgaaggcaccatccccaagggtcaatacggtggcgga
accgtcatgctctgggaccggggatattgggaacccgagggaaacaaaacggcggaacaa
gccctggccaagggcgatttcaaattcacgctcgaaggcgagcgcctgcacggtagtttt
gtgctcgtccggatgcgcggacgcgagggcgagaagcgcaccaattggctcctgattaag
caccacgacgaccatgcggttgaggagaacggcgcagccatcctggaggagaacgacacc
tccgttgcgtccggtcgcacgatggaggcgatcgcgtcgggaaagggccgcaagccgaaa
cctttcatgacgcagggctccgtcgtcgaggctgatgctgtctgggatagcaccgagggc
ctggccgccgacgagcgaaaggccggaacgaagacgaaggcaaagccgaccaagaaagcc
gccgctgctgcaaagcagccgaacaccggtatgccggaattcgtgccaccgcagctttgc
gaaacgttctcccgcccgccttctgccgagggatggatccacgaagtcaagttcgatggc
taccggatccagatgcgggtggtggatggcaatgtcaccctgaaaacccgcaaaggcctg
gactggactgcgaaatggcccgctatcgccaaggctgcctcgtcacttcccgattgtatt
atcgacggagagatctgcgctctcgacaatcatggtgcgccggacttcgccgcccttcag
gcagcactttcggaagaaaagaccgatgacctcgtcttcttcggtttcgatctgctattc
gaaggtgaggaagatctccgcgaagctccgctcaccgagcgcaaagaacgattgtcggca
atgctgtccgatgcgggtgacgatccgcgtctgaggttcgtcgagcatttcgagacaggc
ggagacgccgtgctgaagtcggcgtgccgactttcgctggaaggcatcgtgtcgaaaaag
ggcgatgcaccataccaatccggccggagtgacacctggacgaaatccaagtgccgggcc
gggcacgaggtggtcatcggagcctatgccacgaccaacggtgccttccgatcgctgctg
gtcggtgtctatcggggcgaccatttcgtctatgtcggacgggtgggaacgggctatgga
gcgaaggtcgtcgaccagatcctaccgaagcttcaagcgttggaagcgtcgaaatcgccg
ttcaccggaataggcgccccaaaaaaagccgccgagatcgtatggctgaagccggaactg
gtagccgagatcgaattcgccggctggacggctgatgggcaagtgcgccaggctgcgttc
aaggggctgcgagaggataagcccgcaaaagaagtcgaggccgagaagccggcagaacct
gccgaagtcgatacgcccgacccggaaactgctcgcaagccggccccgacgccgacgaca
tcttcccgtcttcgcaagggtgcaaaggtcgacgtcatgggcgtcctggtctccagcccg
gacaaggagttgtggcctgacgcacttgatggcgaacccgtaacgaaagtggacctcgct
cactattatgaggcagtcgggccttggctcatcgatcatatcaagggccggccgtgctca
atcattcgcacgcctgacggtattggcggggagcagttcttccaaaggcatgcgatgcag
gggacatcaaacctgatcgaacaggtgaaagtctcaggcgacaagcagccgtacctccag
atcggccgcgtcgagggtttggccgcgatcgcacagatcggcggcgccgagctacatccg
tggaactgcgaaccctatcagcctgaagtccccggtcgtctcgtcttcgatctggaccca
ggcccggatgtcgacttcgcgacagtggtagaaggtgcacgagaaatcagggatcggctt
gaagagctgggtctggtcagcttctgcaagacgacgggcggcaaagggctccatgttgta
acgccgctcgctgttccgaagggcaagaagctgagctgggacgaaggcaaggctttcgcg
cacgacgtgtgtctgcagatggcccgcgacaatcccgagctttacctgaccaagatgtcc
aaggcgcagcgtgaaggccgtatcttcctggattatctgagaaacgaccgcacctcgacg
gcggtggctcccctgtcgccccgtgcccggccgggagcaaccgtctcgatgcccttgaac
tgggctcaagtaaaaaaaggtctcgatccgaagcggttcacaattcgcacggtgcctgga
cttctgaaggataatacggcgtggcaggactattgcgatggtcaaaggccgctagagcag
gcgatcaagcgcttggagaaacttatgaggcgggctgcgtga
DBGET
integrated database retrieval system
