Apaloderma vittatum (bar-tailed trogon): 104270630
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Entry
104270630 CDS
T08559
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit alpha-1-like
KO
K05637
laminin, alpha 1/2
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit04510
Focal adhesion
avit04512
ECM-receptor interaction
avit04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104270630
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104270630
09142 Cell motility
04820 Cytoskeleton in muscle cells
104270630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Laminin_I
Laminin_II
Laminin_EGF
Laminin_B
Hepar_II_III
Motif
Other DBs
NCBI-GeneID:
104270630
NCBI-ProteinID:
XP_009863348
LinkDB
All DBs
Position
Unknown
AA seq
1582 aa
AA seq
DB search
DSWKYFNSVSDEPVLRSDFMSVLSNVEYILIKAAYGQGLQQSRIANISMEIAVKMEEMHL
GRARAHLVEQCRCPAGYAGLSCQSCAPGYYRGKHTELGVKEPHSLIAPCVPCQCNNHSET
CDTETGKCLNCRDNTVGDYCSACAPGYYGKVIGSINDCSLCACPRANSVSFSPTCVLKGV
QDYHCDACLPGYEGQYCERCSPGYYGDPQLPDGSCHPCRCNRNGSVHANCDHATGQCLCK
QGVTGQLCEECEPRHLLVGDECISCDDNCTGVLLNTLDNLNEALLSVNLTGVARVPYGIL
SELENTTKHLKGSLVLREDPTYSVDTAKENLLSLSGGIDQLHEESSRFLKKAWQLNTMTQ
ETRNKSQELTGFIDTVHTTIKVLAEVAVSLNETLGLDLPLSNAASQSLQDDISALLDAMR
KKDFVQQHHNSTSVLKAAENLLIQIQKEYLKPQQELAELKKDASQLLSKHNSRLQDAQDL
VNEALANVNETNRLFPLISNNLAELNDKKLNIKEGEEVSTMLIKEGKVLVNAAAALAQDL
KNSTSNLEVHQDGLVLWSTKLRHHVDELVMQMSVRGVLDLVYRAEDHATQFQRLADALES
GLSKVRNVTLNTTAAIHTHSSVKSVIERTESLADDASRVVNGPLDLPEESLSLLGKEALL
LSSKFQNEAKNLKQRSDGFLFGLNGLNKKVKKIQESTNKIVNHLNDSLLTLRALPNDTRK
YILEVKDLAVSANTSAMVHLSHFGDFSQKLLNTTSTLSQVNDTLRKTSELMTDSSKAAIT
AEIRVKEVEAQASLLLDRLKPLKMLEENLNRNLSEIKELISQARKQAASIKVAVSAERDC
IRAYQPQISSTNYNTLTLNVKTAEPDNLLFYLGSNGKTDFLAVEMRRGKVALLWDLGSGS
TRVEYPDFQINNNKWHRIHATRFGKTGTLSIEEMNSSQKPSSKSATSPGTASILDVNKST
LMFIGGLGGQIKKSPAVKVTYFKGCMGEASLNGKSIGLWNYVEREGKCNGCFGSPQDEDT
SFHFDGSGYSVVEKALRSTVTQIIIFFSTFSPNGLLLYLASNGTRDFLSLELVDGKVRLT
VDLGSGPLALTTENRYNNGTWYKISFSRNKKQGILAVTDAYNLNYKETKQGESXXXXXXX
XXXPEVLRFDKDPIFIGGLPRSRTVRKGLSSRMYVGCMKNLEISRSTFDLLRNSYGVRKG
CVLEPIRSVNILNNGYIELEPKPLRPESELMATFATKTSSGIILAGLSRGLEKRRRRQAH
LPFFSIMLIDGHLAVHVNAGDRASTRKVILQSANGTYSDGQEHSVILIRNKRIITVQVDE
SNPAELRLGSSAEMSPINITNFYAGGIPAGEGILGLKMAGSFHGCISNLIFNKGLLYFTI
SMKYEHVDLDRCFLSEQSKPAIQPEFIEIQPERQALPVPLRPLTDTKKVVCAKDELPGHV
QGAHQFGLAKGSHLTLLFNQSTVRKKLSVQLNLRTFASSGLIYYMAHQNQVDYAALQLHG
GQLYFSFDLGKGKAVALHPAVINDGKWHTIKTEYVKRKGIIIVDEQELVAVTALGDGSTL
DVEGKLYVGGLPLDYVPKNLGN
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
gattcttggaagtattttaactctgtgtctgatgagcctgtcttacgttccgacttcatg
tctgtgctaagcaacgttgaatacatccttatcaaggcagcttatggccaaggattacag
caaagcagaattgcaaatatctccatggaaattgcagtgaaaatggaagagatgcatcta
ggcagagctagagctcatcttgtagagcaatgcagatgtcctgctggttatgctggattg
tcctgtcagagctgtgctccggggtactacagggggaaacatacagaacttggtgtaaag
gagcctcactctctgatagcaccttgtgtgccatgtcagtgcaacaaccatagtgaaacc
tgtgatactgaaactggaaagtgcttgaactgcagagataacacagttggtgattactgc
agtgcttgtgccccaggctactatgggaaagtaattggatctattaacgactgctctctg
tgtgcctgtcccagagccaactctgttagttttagtcccacttgtgtcctgaaaggtgtt
caggattaccactgtgatgcttgtctcccaggatatgaaggacagtactgtgaaaggtgc
tcccctggctattatggtgaccctcagcttcccgatggcagctgccatccgtgtcggtgc
aatcggaacggctctgttcatgctaattgtgatcatgcaactgggcagtgcctctgcaag
caaggtgtgacaggacagctctgtgaggagtgtgaaccgaggcatcttcttgtgggagat
gaatgcatttcttgtgatgacaactgcacaggagttttgttaaacactttggataatctc
aatgaggccctgctttcagtgaacctcactggtgttgcacgtgtgccctatgggatattg
tcagagttggagaatacaacaaaacatctgaaggggtcattagttctcagagaagatcca
acttactcagtagatacagcaaaagaaaatcttctgagtttatcaggaggaattgatcag
ctgcatgaagagtcatctagatttttgaaaaaagcatggcaacttaacacaatgactcag
gaaacaaggaataaaagtcaagaactgactggatttattgacacagtacatacaaccatc
aaagtacttgctgaagttgctgtgtcgctaaatgaaacactgggcctggatctcccgctg
tcaaatgctgcatctcagagcctgcaggatgatatttctgcccttttggatgcaatgcgc
aagaaagattttgtgcaacagcaccataattctaccagtgtcctaaaggctgcagaaaat
ttattgatccagattcagaaagaatatcttaaaccccagcaggagcttgctgaattaaaa
aaggatgcaagccagctcttatcaaagcacaacagcaggctgcaagatgcccaggacctg
gtgaatgaggcactcgctaatgtcaatgagaccaatcgcctgtttcctcttatctctaac
aaccttgcagagttaaatgacaaaaagctaaatataaaggaaggtgaagaagtctcgacc
atgcttattaaagaagggaaggtcctagtgaacgctgctgctgctcttgcccaagattta
aagaactctacatctaacctggaggtccaccaggatggattagtcttatggagcaccaaa
ctgcgacaccatgtggatgagctggtgatgcagatgtctgtgagaggagtgcttgacctg
gtatacagagccgaggaccatgccacgcagttccaaagacttgcagatgccctagagagt
ggcctctctaaagtaagaaatgtgactctgaacacaactgctgctatccacacccactcc
agcgttaaaagtgttattgaaagaacagagagtttagcagatgatgcatctagagttgtg
aatggccctttggatttgccagaggagagtctcagtcttcttggaaaagaagctttactg
cttagctccaaatttcaaaatgaagcaaaaaatctgaagcagagaagtgatggctttctg
tttggattgaatgggttgaacaaaaaggtgaaaaagattcaggaaagtactaataaaatt
gtcaaccatcttaatgattccctgttgacacttagagcgttgcctaatgatacaaggaaa
tacatacttgaggtgaaagaccttgctgtatctgcaaacaccagtgccatggtgcattta
agtcactttggggatttcagtcaaaagctgctgaatactacttctacattgtcccaagtt
aatgacacattgaggaaaactagtgaacttatgactgattcatcaaaagctgcaatcaca
gctgaaatacgagttaaagaagtcgaagcacaagcaagtcttttattggataggctgaaa
ccattgaaaatgctagaggagaacctgaacagaaacctgtctgaaattaaagagctcatc
agccaggcccgcaagcaggcagcatctattaaagttgcagtatcagcagaaagagattgc
attcgtgcctaccaaccccagatttcatctacgaattacaacaccttgacactcaatgtg
aaaactgccgaaccagataacctccttttctacctgggtagcaatggaaagacagatttc
cttgcagtggagatgcgacgtggtaaggtagctcttctttgggatttgggctctggatca
acaagagtggaataccctgatttccaaatcaacaacaacaaatggcacagaatacatgca
accaggtttggaaaaacaggtacactaagcatagaggaaatgaactccagccagaagcct
tcatcgaaatctgcaacttctccagggacagccagcatactggatgttaacaaatcaacc
ctcatgtttatcggaggacttggagggcaaattaagaaatcacctgcagttaaagtgacc
tattttaaagggtgcatgggagaggcatccctgaatggcaaatctattggactttggaac
tatgtggaaagagagggcaagtgcaatggctgttttggaagcccacaggatgaggacact
tcattccattttgatggcagtggatactcagttgtagagaaggcactccgctcaacagtg
actcagatcataatattcttcagtaccttttcacctaatgggctacttctatatcttgct
tcaaatggcactagagatttcttgtcccttgagcttgttgatggcaaagtgagactgact
gttgatctaggttcaggacctcttgctcttacaacagaaaatcgttacaacaatggaaca
tggtataaaatatcattcagtcggaacaagaaacaaggaattttggcagtcacggatgca
tacaaccttaattacaaagaaacaaagcaaggagaatcnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnncctgaggtgctccgctttgataaggacccgatcttcattggtggactgccc
agatcgaggactgtgaggaaaggtcttagtagtagaatgtatgtgggctgcatgaagaat
ctggaaatatcacgttcaacctttgacttgcttagaaattcatatggagtaagaaaaggc
tgtgtattggagcctattcgtagtgtgaacatcttgaacaatggatatattgagttggaa
cccaagcctttaagaccagaatcagaactgatggcaactttcgctacaaagaccagcagt
ggcatcatccttgctggactcagcaggggattggaaaagcgacgacgtaggcaagcgcat
ttacccttcttttccatcatgctgattgatggtcaccttgcagtgcatgttaatgctgga
gatagagcaagtactagaaaagtaattcttcagtctgctaatggaacctacagtgatgga
caagagcactctgttatcctaatccggaataagaggatcataactgtacaggtggatgaa
agtaatcctgcagaactgaggcttggttcatcagcagaaatgagccccattaatattacc
aacttctatgctggtggcattccagcaggagagggcatcttagggctaaaaatggcgggt
tcctttcatggctgtatcagcaatcttatttttaacaaggggcttttgtatttcaccatt
tccatgaagtatgaacatgtggatctggacagatgctttttgtcagagcagtctaaacca
gccatacagccagaattcattgagattcaacctgaacgtcaggctttgccagttcccctg
aggcctcttacagacacaaaaaaagtagtttgtgcaaaagatgagctacctggtcatgtt
caaggcgcccatcagtttggacttgccaaaggcagccacttgacactgctctttaatcag
tctactgtcaggaagaaactttctgtccagctgaatctcagaacctttgcctccagtggc
ctgatttactacatggctcaccagaaccaggttgattatgcagccctacagcttcatggg
ggacagctctatttctcatttgatctaggcaaaggaaaagcagtagctcttcaccctgct
gttatcaatgatggaaaatggcatacgataaaaacagaatacgttaaaagaaaaggtata
atcattgtggatgaacaggaattggtagcagtcactgctctgggagatggtagcactttg
gatgtggaggggaagctctacgtgggaggactacctttagactacgtgccaaagaatctt
ggaaac
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