Archangium violaceum: JQX13_28025
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Entry
JQX13_28025 CDS
T07137
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
avm
Archangium violaceum
Pathway
avm03030
DNA replication
avm03410
Base excision repair
avm03420
Nucleotide excision repair
avm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JQX13_28025 (ligA)
03410 Base excision repair
JQX13_28025 (ligA)
03420 Nucleotide excision repair
JQX13_28025 (ligA)
03430 Mismatch repair
JQX13_28025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avm03032
]
JQX13_28025 (ligA)
03400 DNA repair and recombination proteins [BR:
avm03400
]
JQX13_28025 (ligA)
Enzymes [BR:
avm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JQX13_28025 (ligA)
DNA replication proteins [BR:
avm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JQX13_28025 (ligA)
DNA repair and recombination proteins [BR:
avm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JQX13_28025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JQX13_28025 (ligA)
MMR (mismatch excision repair)
DNA ligase
JQX13_28025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JQX13_28025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
YiiM_3-alpha
Motif
Other DBs
NCBI-ProteinID:
QRK04120
LinkDB
All DBs
Position
complement(6544479..6546506)
Genome browser
AA seq
675 aa
AA seq
DB search
MNASKTADATRIEQLRKELAHHNYRYYVLDSPEVSDAEYDRLMRELQDLESRHPDLITVD
SPTQRVGGAAAEKFEKVVHRVPMLSLANVFNDEELSDFDERIRRQTGLAQVAYVCEPKLD
GLAITLHFEHGRFARGATRGDGTEGEDVSANLRTIRSLPMELLPQNGVEVPGGLEVRGEV
FISKKDFKKLNDKREEEGEPLFANPRNAAAGSLRQLDPRITASRPLSLYLYECVPGEGVP
AFGSHTEKLEYLKSLGLPVNRYVRVESVEGVREQYRKSVEGRHALPFEVDGMVVKVDEED
LRQRLGQISKSPRWAVAYKFPPEEEATLVEDIQVYVGRTGALTPVAHLKPVKVGGVTVSR
ATLHNEDELRRKDVRKGDTVFIRRAGDVIPEIVKVVESKRPADAQPFVFPTECPVCHAAA
VKDDEGAIIRCTGATCPAQMVEKVRHFASRTAMDIDGLGEKLAGQLVETGLVKTFADLYH
LTRGKLLELERMGEKSADNLLANIERSKQTTQPRFLYALGIRHVGEATAKTLAEAFPDVR
QLYEASLEDITRVKDVGPTMAQVIHAFFHEPQNREAIDALLAAGVAPAAPRVVKTGVFAG
KTVVLTGGMSGMSRDQAKEEIERRGGKVSGSVSRKTDMVVAGEDAGSKLKKAQELGVRIL
DEQAFLQLLQTDARG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgcctcgaagaccgccgacgccacccgaatcgagcagctccgcaaggagctggcc
caccacaactaccgttactacgtgctcgactcgccggaggttagcgacgcggaatacgac
cggctcatgcgggagctgcaggacctggagtcccgccacccggacctcatcaccgtggac
tcgccgacccaaagggtgggcggggccgcggccgagaagttcgagaaggtggtccaccgc
gtcccgatgctctcgttggcaaacgtcttcaacgacgaagagctttccgatttcgacgag
cggatccgccgccagacaggactcgcgcaggtcgcctatgtgtgcgagcccaagctcgac
ggcctggccatcaccctgcacttcgagcacggacgcttcgcccggggcgccacccgcggc
gacggcaccgagggcgaggacgtcagcgccaaccttcgcaccatccgcagccttcccatg
gagctgctcccccagaacggggtggaagtgcccggcggcctcgaggtgcggggcgaggtc
ttcatttccaagaaggacttcaagaagctcaacgacaagcgcgaggaggagggcgagccg
ctcttcgccaacccgcgcaacgccgccgccggcagcctgcggcagctggacccgcgcatc
accgcctcgcgcccgctctccctctatctgtacgagtgcgtgcccggcgagggagtaccc
gccttcggctcgcacacggagaagctcgagtacctcaagtcgctcgggttgccggtgaac
cggtacgtacgcgtggagagcgtggagggggtgcgcgagcagtaccgcaagtccgtcgag
ggccgccatgccctgcccttcgaggtggacggcatggtggtgaaggtggacgaggaggac
ctgcgccagcggctggggcagatttcgaagagcccgcgctgggcggtggcctacaagttc
ccgcccgaggaggaggcgacgctcgtcgaggacatccaggtgtacgtgggccgtacgggc
gcgctcaccccggtggcgcacctcaagccggtgaaggtgggcggcgtcaccgtgagccgc
gccaccctgcacaacgaggacgagctgcgccgcaaggacgtgcgcaagggcgacaccgtc
ttcatccgccgcgccggtgacgtcatccccgaaatcgtgaaggtggtggagtccaagcgg
ccggcggatgcccagcccttcgtcttccccaccgagtgccccgtctgccacgcggccgcc
gtgaaggacgacgagggcgccatcatccgctgcaccggcgccacctgccccgcgcagatg
gtggagaaggtgcgccacttcgcctcgcgcacggccatggacatcgacggcctgggcgag
aagctggccggccagctggtggagacgggcctggtgaagaccttcgcggacctctaccac
ctcacccggggcaagctcctggagctggagcgcatgggcgagaagagcgccgacaacctg
ctcgccaacatcgagcgctccaagcagaccacccagccccgcttcctctacgcgctcggc
atccgccacgtgggcgaggccaccgccaagacgctcgccgaggccttcccggacgtgcgc
cagctctacgaggccagcctcgaggacatcacccgcgtcaaggacgtgggccccaccatg
gcccaggtcatccacgccttcttccacgagccgcagaaccgcgaggccatcgacgcgctg
ctcgccgcgggagtcgcgccggccgcgccccgcgtcgtgaagacgggcgtcttcgccggc
aagacggtggtgctcaccgggggcatgagcgggatgagccgcgaccaggcgaaggaggaa
atcgaacgccgggggggcaaggtgtctggaagtgtctcgcggaagactgacatggtggtg
gcgggcgaggacgccggtagcaagctgaagaaggcccaggaactcggggtaagaatcctg
gacgagcaggccttcctgcagctgctccagacggacgccagagggtaa
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