Acinetobacter wuhouensis: BEN71_15525
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Entry
BEN71_15525 CDS
T05823
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
awu
Acinetobacter wuhouensis
Pathway
awu03030
DNA replication
awu03410
Base excision repair
awu03420
Nucleotide excision repair
awu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
awu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BEN71_15525 (ligA)
03410 Base excision repair
BEN71_15525 (ligA)
03420 Nucleotide excision repair
BEN71_15525 (ligA)
03430 Mismatch repair
BEN71_15525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
awu03032
]
BEN71_15525 (ligA)
03400 DNA repair and recombination proteins [BR:
awu03400
]
BEN71_15525 (ligA)
Enzymes [BR:
awu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BEN71_15525 (ligA)
DNA replication proteins [BR:
awu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BEN71_15525 (ligA)
DNA repair and recombination proteins [BR:
awu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BEN71_15525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BEN71_15525 (ligA)
MMR (mismatch excision repair)
DNA ligase
BEN71_15525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BEN71_15525 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_lig_T4_1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AXQ23396
UniProt:
A0A385C848
LinkDB
All DBs
Position
complement(3122077..3124107)
Genome browser
AA seq
676 aa
AA seq
DB search
MENNPVVMQMRQLIQLIAKHNHAYYVMDEPSIEDSEYDQLFHQLKALEQQHPELIQADSP
TNKVGGKALSKFETITHTVPMLSLGNVFNQEELFAFARRIEERLPNQKIQYDVELKFDGL
AISLWYENGVLVRGVTRGDGETGEVITQNVKTIRNLPKVLSSDKVEVPRLLEVRGEVLMP
KAGFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPSIAASRPLAFYAYGIAQCEPNHGIH
SMSASLEWLTNFGFAVGERHFVCDSIQEVQEKYEQINQERPDLAVEIDGMVIKVDDLQQQ
QKLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVIVSNVT
LHNIGEIHRLDVRVGDTVSVYRSGDVIPKVEKVWLEFRPNDVVEVHLPENCPVCSSPVVM
PEGEALARCSGGLYCSAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHREQLLTIEKMGEKSVQNLFDAIENSKKTTLAAFIYALGIRGVGETTARMLANTFQTL
DAIRNADLESLKKTPDVGDITAEWIVDFFNAPHNLEVVDRLLAAGIHWDAPIAPTRQPLN
GESWVITGTLATMGRDDATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAEKLGVAV
LNEQEFLALMAEYGQA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataatcctgtcgtgatgcaaatgcgtcaactcattcaactgattgcaaagcat
aatcatgcctattatgtgatggatgaaccgagcattgaggacagtgaatatgatcagcta
tttcaccaactcaaagcattagagcaacaacatcccgaattaatccaagcggattcaccc
actaacaaagttggcggtaaggcattatctaagtttgaaaccattacccataccgttcca
atgctgtctttaggcaatgtctttaatcaagaagaactatttgcttttgcacgccgtatt
gaagagcgtttaccgaatcaaaaaatacaatatgacgttgaattaaagttcgatggatta
gcaatttctctttggtatgaaaatggcgtcttggttcgtggcgtaacccgtggtgatggt
gaaacaggggaagtgattacccaaaatgttaaaaccattcgtaatctaccaaaagtgctt
tcatcagacaaagttgaagtcccacgtttgttagaagtacgtggtgaagtattgatgcct
aaggctggctttgaaaagctgaatgctgaaaatgaagccaaaggtgaaaaaacctttgcc
aatccacgtaatgctgcagcaggaagtctacgtcaacttgatcccagtattgcggcttcg
cgcccattggcattctatgcctatggcattgcgcaatgtgaaccaaatcacggcattcac
tccatgtctgcaagtttggaatggttgaccaattttggttttgcagtcggcgaacgtcat
tttgtatgtgacagtatccaagaagtccaagaaaaatacgagcagatcaatcaagagcgt
ccagatttagcggttgaaattgatggtatggtcatcaaagtagatgacttacaacaacaa
caaaagctcggctttttaagtcgtgaaccacgttgggcgacggcttataaattccctgca
gttgcagcattaaccaccgttgaaaatattgattggcaagtcgggcgtactggaacattg
actcctgtggcacgtttaaatcctgttgctgtcggtggggtaattgtttccaatgtgact
ttacataacatcggtgaaattcatcgtttagatgttcgtgttggcgatactgtcagtgtt
tatcgtagcggcgatgtgattccaaaagttgaaaaggtttggttggaattccgtccgaat
gatgtggtcgaagtacatttacctgaaaattgtcctgtgtgttcttcacccgtagtcatg
cctgaaggtgaagctttggcgcgttgttcaggtggtttatattgttcagcgcaacggatt
gaagcgattcgccactttgtgtcacgtaaagccttagatattgaaggtttgggtgatcgt
tgggttgaatcattactgcatcttgatttactcaaagatgtcgctgatatatatcactta
catgagcatcgtgagcagctactcacgattgaaaaaatgggtgaaaagtcggttcaaaat
ctgtttgatgcaattgaaaatagtaagaaaaccacactcgctgcttttatttatgcgctc
ggtatccgtggtgttggtgaaacgactgcgcgtatgttggcaaatacgtttcagactttg
gatgcaattcgcaatgcggatttagaatcattgaaaaagaccccagatgtaggtgatatt
accgctgaatggattgtcgatttctttaatgcaccgcataacttagaagtggtagatcgt
ttattggcagcagggattcattgggatgcgccaattgcaccaacgcgtcagccgttaaat
ggtgaaagctgggtaatcacagggacattggcgactatggggcgtgatgatgcgacacaa
atgttgcaagctttgggtgcgcgtgtgagtggtagtgtgtcgagtaaaaccaagtgtgta
gttgcaggtgaaaaggcaggttctaagttagaaaaagctgaaaaactcggagttgctgtt
ttgaatgagcaagagtttttagctttgatggcggagtatgggcaggcttaa
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integrated database retrieval system
