Alloalcanivorax xenomutans: P40_08755
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Entry
P40_08755 CDS
T04770
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
axe
Alloalcanivorax xenomutans
Pathway
axe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
axe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P40_08755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
axe03400
]
P40_08755
Enzymes [BR:
axe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P40_08755
DNA repair and recombination proteins [BR:
axe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P40_08755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ARB45498
UniProt:
A0A9Q3W5Y1
LinkDB
All DBs
Position
complement(1880599..1884048)
Genome browser
AA seq
1149 aa
AA seq
DB search
MTLLPDSSLFSTGREHYRDWRDPGAGGLAAVLAELARRDEGLLLVAAPSSNRAQQLADSL
SFYLADREVPVRLFPDWETLPYDLFSPHQDIVSDRIQALHWLGQARGGVLVVPVNTLMQR
LAPPIHINGNHFQLKVNDTFDMEATRQQLVACGYRQRDNVYEHGEFAVRGAIMDIFPMGA
TQPFRVELFDQDIESLRLFDPESQRSTGQVQEINLLPAAEYPLSQDGIRHFRGAFRETFD
VEPRKVPLYEDVSEGIASPGLEYYLPLFFEQLATLFDYLPANARVVELAECEEAANHFWD
EVNQRYESRRHDIRRPVLPPHSLFLRPDELAGAWKTLPRARVRDSEQALTFNLAPSPRLA
ADPHSGNVLAPLHTFSDAHPDTRILVVAETAGRREALLELMQKVSIQPALKEGWRDFLDA
PERWNLTRGELDAGFYAPDHDLLVVSESELYGERIMQRRRRRTSEDSGQDLAVRSLGELT
IGAPVVHLDHGVGRYQGLVHMTVDHQPHEFLLLEYAGGDKLYVPVSSLHLISRYGGGEHP
PLNRLGSEQWSKARQKAAEKINDVAAELLNTYARREAREGRAFPLEQEDYQRFASGFPFE
ETPDQENAINAVIADMQRQKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGTQVAVLVPTTL
LAQQHYESFVDRFADWPVQIEVLSRFRSAKDKSQVLTRLAEGKVDIVVGTHQLLQENVSF
KDLGLIIVDEEHRFGVRHKERLKEMRAECDILTLTATPIPRTLNMALSGMRDISIIATPP
QRRLSVKTFVRQRDDTALKEAILRELLRGGQVYYLHNDIDTMSRAAEQIQALVPDARVGI
AHGQMRERELEAVMGDFYHRRFNVLVCTTIIETGIDVPSANTIIIERADKLGLAQLHQLR
GRVGRSHHQAYAYLVTPSPKAMTKDALKRLEAIEQTTDLGAGFVLASQDLEIRGAGELLG
EEQHGNMETIGFTLYMEMLEQAVEALKRGEQPDTAKPLSGGPEVNLRVPALIPEDYLPDV
FTRLTLYKRIAGCKTGDQLRELQVEMIDRFGLLPEPVKTLFKVTALRQQAEALAITRVDA
NAAGGKLEFAERTPVDPLTVVKLMQNAPNRYRLEGAHTLRFQLPSETADERVQLVEQLLE
HLAGNGKAP
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgttacccgattcttccctgttttccaccggacgtgaacactaccgcgactgg
cgcgatcccggcgccggcggtctggcggcggtactggcggaactggcccgccgtgatgag
ggcctgctgctggtggccgcgccgtccagcaaccgtgcccagcaactggcggattccctg
tccttttatctggcggaccgggaagtgccggtgcggctgtttccggactgggaaaccctg
ccctacgatctgttcagtccccaccaggacattgtcagcgaccgcatccaggcgctgcac
tggctcggtcaggcccgcggtggcgtcctggtggtgccggtgaacacgctgatgcagcgg
ctggcgccgccgatccatatcaatggcaatcatttccagctcaaggtcaacgacaccttc
gacatggaagccacccgccagcagttggtggcctgcggctaccggcagcgcgacaacgtc
tacgaacacggcgagttcgccgtgcggggcgccatcatggatatcttccccatgggcgcg
acacaaccgttccgggtggaactgttcgaccaggacatcgaatccctgcgtctgttcgac
ccggagagccagcgctccaccggccaggtccaggaaatcaatctgctgccggcggcggag
tacccgctcagtcaggacggcatccgccatttccgcggtgccttccgggaaaccttcgac
gtggagccaagaaaagtcccgctctatgaagacgtgtccgaaggcatcgccagcccgggg
ctggagtactacctgccgctgttcttcgagcaactggccactttgttcgactatctgccg
gccaacgcccgggtggtggaactggccgaatgcgaagaggccgccaaccacttctgggac
gaagtcaatcagcgctatgaatcccgccgccacgacatccgccggccggtgctgccgccg
cacagcctgttcctgcgcccggacgagttggccggcgcctggaaaaccctgccccgggcc
cgggtgcgcgactccgaacaggcgctgacgttcaacctggcgccctcaccccggcttgcc
gccgacccgcacagcggcaatgtactggcgcccttgcataccttctccgatgctcacccg
gacacccgcatcctggtggtcgcggaaaccgccgggcgccgcgaggcactgctcgaactg
atgcaaaaggtctcgatccagccggcactgaaagaaggctggcgggacttcctcgacgcc
cccgagcgctggaatctgacccggggcgagttggacgccggcttttacgcgccggaccac
gatttgctggtggtcagcgaaagcgaactgtacggcgagcggatcatgcaacggcggcgg
cgccgcaccagcgaggacagcggccaggatctggcggtccgctccctgggcgagctcacc
attggcgccccggtggtgcacctggaccacggcgtcggccgctatcagggcctggtgcac
atgaccgtggatcatcagccccatgaattcctgctgctggaatacgccggtggtgacaag
ctctatgtgccggtgtcctcgctgcatctgatcagccgctacggcggcggcgaacaccca
ccgctgaatcgtctgggcagcgagcaatggagcaaggcgcggcaaaaagccgcggaaaaa
atcaacgatgtggcggcggagctgctcaacacctatgcccgtcgcgaagcccgcgaaggc
cgggctttcccgctggaacaagaggattatcagcgcttcgccagcggcttcccgttcgag
gaaaccccggaccaggaaaacgccatcaacgcggtgatcgccgacatgcaacggcaaaaa
cccatggaccgcctggtctgtggcgatgtcggtttcggcaaaaccgaggtggccatgcgc
gctgctttcgtggcggtccagaacggcacccaggtagcggtactggtccccaccaccctg
ctcgcccagcagcactatgaatccttcgtcgaccgtttcgccgactggccggtgcagatc
gaagtgctgtcccgtttccgcagcgccaaggacaaaagccaggtgctgacacggcttgcc
gagggcaaggtggatatcgtcgtcggcacccaccagttgctgcaagagaatgtcagtttc
aaggacctgggcctgatcattgtcgacgaggaacaccgtttcggcgtgcgccacaaagag
cggctcaaggaaatgcgcgccgagtgcgacatcctcaccctcaccgccacaccgattccg
cgcaccctgaacatggcgctcagcggcatgcgcgacatttccatcatcgccacgccgccg
cagcggcgcctgtcggtgaaaaccttcgtgcggcaacgggacgacaccgccctcaaggaa
gccatcctgcgggagttgctgcgtggcggtcaggtctactacctgcacaacgacatcgac
accatgagccgcgccgccgaacagatccaagcgctggtgccggacgctcgggtcggcatc
gcccacggccagatgcgcgaacgggaactggaagcggtaatgggcgacttctaccatcgc
cgtttcaacgtgctggtgtgcaccaccatcattgaaaccggcatcgacgtacccagcgcc
aacaccatcatcatcgagcgcgccgacaaactcggcctggcgcagttgcaccaactgcgg
ggacgggtcggccgcagccaccaccaggcttacgcctacctggtcacgccttcccccaag
gcgatgaccaaggacgcgctgaaacggctggaagccatcgaacaaaccaccgacctgggt
gccggcttcgtgctcgccagccaggatctggaaatccgcggcgctggcgagctgctcgga
gaagaacagcacggcaacatggaaaccattggtttcacgctctacatggaaatgctggag
caggcggtggaagcactcaaacgtggtgagcaaccggacaccgccaaaccgctgtccggc
ggcccggaagtcaacctgcgggttcccgccctgattccggaagactacctgccggacgtg
ttcacccgcctgaccctgtacaaacgcatcgccggctgcaaaaccggcgaccagttacgg
gaattgcaggtggaaatgatcgaccgtttcggcctgctgccggaaccggtgaaaaccctg
ttcaaggtcaccgctttgcggcaacaggcggaagcgctggccatcacccgggtggacgcc
aacgccgccggcggcaaactggaattcgccgaacgcaccccggtggacccgctcaccgtg
gtcaaactgatgcagaacgcccccaaccgctaccgcctggaaggcgcccacaccctgcgc
ttccaattgccgtcggaaaccgccgatgaacgcgttcaattagtcgagcagctgttggaa
catctggcggggaacgggaaagcgccgtga
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