Achromobacter xylosoxidans A8: AXYL_06730
Help
Entry
AXYL_06730 CDS
T01341
Symbol
ligD2
Name
(GenBank) DNA ligase D 2
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
axy
Achromobacter xylosoxidans A8
Pathway
axy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
axy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AXYL_06730 (ligD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
axy03400
]
AXYL_06730 (ligD2)
Enzymes [BR:
axy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AXYL_06730 (ligD2)
DNA repair and recombination proteins [BR:
axy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AXYL_06730 (ligD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADP20014
UniProt:
E3HY60
LinkDB
All DBs
Position
pA82:89324..91846
Genome browser
AA seq
840 aa
AA seq
DB search
MPESLKKYREKRNFAVTSEPAGGGAANEAARAFVVQKHWASRLHYDFRLELGGAMKSWAV
PKGPCYDPSVKRMAVQVEDHPIAYNQFEGTIPKGEYGAGKVIIWDEGTWMPIGDPAKGYR
EGQLKFDLAGTKLRGRWALVRIKGKESEKQPPWLLIKDRDEFARDVRDFSVIDEMPDSVV
PLRTPKQRTGRRSREAPAASIGEGNLPGEAADLFESLKPQLATLVDGIPRRGDDWLYEVK
FDGYRMLARVDGKAVKLLTRNGHDWSAKVPHLVTAIQHLNAQSAWIDGEIVVLADNGVPS
FQALQNAFDGKRTRDIVFYAFDLPYIAGRDLRREPLHVRRALLAQLVAPGANDQVRFSES
FDASPTDLIASACRMGLEGIMAKRQSAGYVSRRTDDWVKIKCAKRQEFVIVGYTAPKGGR
LGFGALLLGVYEADGSLRYAGSVGTGFDDRTLSDIKRKLDRLGRKVSSLKSGKPKAGRDV
HWVQPTLVCEVSFAEWTQAGHVRHATFRGIRTDKSARAITREMSIPVAAVEASDAVAPAQ
AGPRAPLRVRSGKLSNPDRVVDPSTGLTKLDLARYYGLVAPLLLEHLANRPVSFVRAPSG
IQGTLFFQKHLDAAIPGVKALPERLHPGHPALLEVSTPEAIMAAAQMNVVEFHTWNAVKS
AIGKPDRLILDLDPGEGVPWATVQQGAQLVRVLLKEIGLEGWLKTSGGKGLHVMVPLRKQ
YDWDTVKAFSEAMVLHLARTLPQLFVAKSGPKNRVGKIFVDYLRNGFGATTVAAWSARAR
PGLGVSVPVAWEELPKLTSGAQWTIAKIHHRLDAANAPWEGVAPQALARPMKALGFFPKS
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgccggagtccctcaagaagtatcgcgaaaagcgaaatttcgcggtcacaagcgaaccc
gccggcggcggtgccgcgaacgaggccgcgcgcgctttcgtagttcaaaagcattgggcc
agtcgccttcattacgatttccgcttggagctcggaggggccatgaaaagctgggcggta
ccgaaaggcccctgctatgacccatcggtcaagcgcatggcggtccaggtggaggaccac
ccaatagcctacaaccaatttgaaggcacaatccctaagggcgagtacggcgcgggcaaa
gtcatcatctgggatgagggcacttggatgccaatcggcgacccggccaagggttatcgg
gaaggccaactgaaattcgacttagccggcaccaagctgcgaggccgttgggcgcttgtt
cggatcaaaggcaaggaatcggaaaagcagccgccgtggctcctcatcaaagacagagat
gaattcgcgcgagatgtgcgggatttcagcgtaatcgacgaaatgccggatagtgtggtg
cctctgcggactccaaagcagcgaacagggcgcagatcgcgggaagctcctgcagcgagc
ataggcgaaggcaatctgccaggcgaagcggcagacctcttcgagtcgctaaaaccgcaa
ctggcgacactggtggatgggatcccgcgtcgtggtgacgattggctttatgaggtgaag
ttcgacgggtaccgtatgctggcgcgcgttgacggcaaagctgtgaagcttctgacccgc
aacggccacgactggagcgccaaggtgccgcaccttgttaccgccatccagcatctgaac
gcgcagtcggcctggatcgacggtgaaatcgtcgtacttgcggacaacggggttccgagt
tttcaagcactccagaatgcttttgatgggaagcggacgcgcgacattgttttctatgcg
tttgacctgccatatatcgctgggagggatttgaggcgcgagcctttgcacgtgcgcaga
gcgctgcttgcacagctggtggccccaggtgcgaacgaccaggtgcgattcagcgagtcc
ttcgacgcgtcgcctactgacctcatcgcttcagcctgtcgcatggggctcgaaggcata
atggccaagcggcaatcggctggctatgtgtcccggcgtacggacgattgggtcaagatt
aaatgcgcgaagcggcaggaattcgtgatcgtaggttacacggcaccgaagggcgggcgg
ctcggatttggcgcgctgctgttgggcgtttacgaagcggacggctcgttgcgctacgcc
ggcagcgtgggcacggggttcgacgaccgcacgttgtcggacataaaacgtaagctcgat
cgcctcgggcggaaggttagttcgctgaaatccgggaagccgaaggcaggccgcgacgtg
cattgggtccaacccacgcttgtctgtgaggtgtcattcgccgaatggacccaggcgggg
cacgtgcgccatgcgacctttcggggaattcggacggataagtcggcgcgcgctatcacc
cgagaaatgtcgatccctgtcgccgcagtcgaagcttcggacgctgtggcgccagcgcaa
gccgggccgcgtgcgccgctccgagttcgatccggaaaactctccaatccagaccgggtt
gtcgacccctcgaccggcctgacgaagctagacctggcacgctattacggccttgtcgcg
ccgctgctgttggaacaccttgcgaaccggcccgtgtcctttgtgcgcgcacccagcggc
attcaaggcacactctttttccagaaacacctagatgcggcgattccaggcgtgaaggcg
ttacccgagcggctgcatcccggtcatcccgcgctgctggaagtgtctacgccggaagcc
atcatggcggcggctcagatgaacgtcgttgaatttcacacttggaacgccgtcaaaagc
gcgattggcaagccggaccgattaattcttgacctggatccgggcgagggggtgccatgg
gcgacagtgcagcagggcgcacagctggtacgcgtgcttctgaaggaaatcggcttggaa
gggtggctcaaaaccagcggtggcaaggggctgcatgtcatggtgccgctgcggaaacaa
tatgactgggacacagtgaaggctttctccgaagcgatggtgctgcatctcgcccgcacg
ttgcctcaactcttcgtggccaaaagcgggccgaagaatcgtgtgggcaagattttcgtg
gactatcttcgtaacggcttcggcgcgacaacggtcgcggcttggtcggcgcgggcccgg
ccaggtctcggcgtatcggtgcccgtcgcttgggaagaactcccgaagctgaccagcggc
gcgcaatggacgatcgcgaaaatacaccaccggctggacgcggccaacgccccttgggaa
ggtgtcgcaccgcaggcgctggcgcgcccgatgaaggcgttgggattcttccccaagtct
tga
DBGET
integrated database retrieval system
